WormBase Tree Display for Variation: WBVar00172522
expand all nodes | collapse all nodes | view schema
WBVar00172522 | Name | Public_name | WBVar00172522 | ||
---|---|---|---|---|---|
Other_name | haw25772 | ||||
cewivar00184934 | |||||
F57F10.1e.1:c.1057+158T>G | |||||
F57F10.1d.1:c.562+158T>G | |||||
F57F10.1a.1:c.805+158T>G | |||||
F57F10.1c.1:c.598+158T>G | |||||
F57F10.1b.2:c.319+158T>G | |||||
F57F10.1b.1:c.319+158T>G | |||||
HGVSg | CHROMOSOME_II:g.6152887T>G | ||||
Sequence_details | SMap | S_parent | Sequence | F57F10 | |
Flanking_sequences | aaatgaattccatactccaaaatta | gtacaaaactgaccaattctagagt | |||
Mapping_target | F57F10 | ||||
Type_of_mutation | Substitution | T | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (22) | |||||
Laboratory | RW | ||||
QX | |||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson1730 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01372392 | |||
WBVar01438090 | |||||
Status | Live | ||||
Affects | Gene | WBGene00019018 | |||
Transcript | F57F10.1d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F57F10.1d.1:c.562+158T>G | ||||
Intron_number | 6/17 | ||||
F57F10.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F57F10.1c.1:c.598+158T>G | ||||
Intron_number | 6/17 | ||||
F57F10.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F57F10.1a.1:c.805+158T>G | ||||
Intron_number | 5/17 | ||||
F57F10.1e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F57F10.1e.1:c.1057+158T>G | ||||
Intron_number | 5/17 | ||||
F57F10.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F57F10.1b.1:c.319+158T>G | ||||
Intron_number | 6/18 | ||||
F57F10.1b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F57F10.1b.2:c.319+158T>G | ||||
Intron_number | 5/17 | ||||
Reference | WBPaper00040707 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw25772 | ||||
Method | WGS_Hawaiian_Waterston |