WormBase Tree Display for Variation: WBVar00178667
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| WBVar00178667 | Name | Public_name | WBVar00178667 | ||
|---|---|---|---|---|---|
| Other_name | pas28253 | ||||
| haw45943 | |||||
| haw145226 | |||||
| cewivar00023672 | |||||
| CE54206:p.Leu184= | |||||
| CE54097:p.Leu184= | |||||
| D2045.1a.1:c.552A>G | |||||
| D2045.1d.1:c.876A>G | |||||
| D2045.1c.1:c.552A>G | |||||
| CE54071:p.Leu292= | |||||
| HGVSg | CHROMOSOME_III:g.10462435A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | D2045 | |
| Flanking_sequences | tggtgtcgacgttcaaagaggattt | acgcaatacacaacgtaatttattt | |||
| Mapping_target | D2045 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (20) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| History | Acquires_merge | WBVar01267823 | |||
| WBVar00216477 | |||||
| WBVar01332855 | |||||
| WBVar00565091 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000231 | |||
| Transcript | D2045.1d.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | D2045.1d.1:c.876A>G | ||||
| HGVSp | CE54071:p.Leu292= | ||||
| cDNA_position | 876 | ||||
| CDS_position | 876 | ||||
| Protein_position | 292 | ||||
| Exon_number | 3/12 | ||||
| Codon_change | ttA/ttG | ||||
| Amino_acid_change | L | ||||
| D2045.1a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | D2045.1a.1:c.552A>G | ||||
| HGVSp | CE54206:p.Leu184= | ||||
| cDNA_position | 637 | ||||
| CDS_position | 552 | ||||
| Protein_position | 184 | ||||
| Exon_number | 4/14 | ||||
| Codon_change | ttA/ttG | ||||
| Amino_acid_change | L | ||||
| D2045.1c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | D2045.1c.1:c.552A>G | ||||
| HGVSp | CE54097:p.Leu184= | ||||
| cDNA_position | 552 | ||||
| CDS_position | 552 | ||||
| Protein_position | 184 | ||||
| Exon_number | 3/13 | ||||
| Codon_change | ttA/ttG | ||||
| Amino_acid_change | L | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw45943 | ||||
| Method | WGS_Hawaiian_Waterston |
