WormBase Tree Display for Variation: WBVar00241265

WBVar00241265 Name: Public_name: qm160
    Other_name: C09H6.3.1:c.99_1114-52del
    HGVSg: CHROMOSOME_I:g.8125905_8127927del
  Sequence_details: SMap: S_parent: Sequence: C09H6
    Flanking_sequences: gaagttaaaaatggcaattaaatgtgcaag attgtagaatttgcgaaaataattgctatc
    Mapping_target: C09H6
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00026668
    Laboratory: MQ
    Status: Live
  Affects: Gene: WBGene00003136
    Transcript: C09H6.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09H6.3.1:c.99_1114-52del
        cDNA_position: 105-?
        CDS_position: 99-?
        Protein_position: 33-?
        Intron_number: 2-6/10
        Exon_number: 2-6/11
  Genetics: Interpolated_map_position: I 2.56101
  Description: Phenotype: WBPhenotype:0001278 Paper_evidence: WBPaper00054564
        Curator_confirmed: WBPerson3890
        Remark: Figure 5, reduced expression of Pabts-1b::gfp in HSNs. Paper_evidence: WBPaper00054564
            Curator_confirmed: WBPerson3890
        EQ_annotations: Anatomy_term: WBbt:0006830 PATO:0000460 Paper_evidence: WBPaper00054564
                Curator_confirmed: WBPerson3890
  Reference: WBPaper00054564
  Remark: This deletion is 1992bp long and causes codon 66 in exon 1 to join to the last 54bp of intron 5. This produces two inframe stop codons Paper_evidence: WBPaper00024594
  Method: Deletion_allele