WormBase Tree Display for Variation: WBVar00250121

WBVar00250121 Name: Public_name: tm1104
    Other_name: F11A6.1a.1:c.487_956+17del
      F11A6.1a.2:c.487_956+17del
    HGVSg: CHROMOSOME_I:g.11677017_11678257del
  Sequence_details: SMap: S_parent: Sequence: F11A6
    Flanking_sequences: atttttgaagaggatgatgatggtactcaa gaattgagccaaaatttacaatttcatcag
    Mapping_target: F11A6
    Source_location: 7 CHROMOSOME_I 11677016 11678258 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1104_external
      tm1104_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1104
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002232
    Transcript: F11A6.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F11A6.1a.1:c.487_956+17del
        cDNA_position: 587-?
        CDS_position: 487-?
        Protein_position: 163-?
        Intron_number: 3-4/8
        Exon_number: 3-4/9
      F11A6.1a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F11A6.1a.2:c.487_956+17del
        cDNA_position: 591-?
        CDS_position: 487-?
        Protein_position: 163-?
        Intron_number: 3-4/8
        Exon_number: 3-4/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
    Phenotype_not_observed: WBPhenotype:0002535 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. S. Shaham to the National Bioresource Project of Japan: no apparent defects in amphid dendrite structure. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 23187/23188-24428/24429 (1241 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele