WormBase Tree Display for Variation: WBVar00250781
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WBVar00250781 | Name | Public_name | tm1817 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | D2030.9b.1:c.677+25_889-128del | |||||||
D2030.9a.2:c.800+25_1012-128del | ||||||||
D2030.9c.1:c.800+25_1012-128del | ||||||||
D2030.9e.1:c.581+25_793-128del | ||||||||
D2030.9d.1:c.581+25_793-128del | ||||||||
D2030.9a.1:c.800+25_1012-128del | ||||||||
HGVSg | CHROMOSOME_I:g.7599392_7600026del | |||||||
Sequence_details | SMap | S_parent | Sequence | D2030 | ||||
Flanking_sequences | aagagagtgagtacatttcacagcaaaaaa | atttattcaaagtttctcaacatgacattg | ||||||
Mapping_target | D2030 | |||||||
Source_location | 7 | CHROMOSOME_I | 7599391 | 7600027 | Inferred_automatically | National_Bioresource_Project | ||
Type_of_mutation | Deletion | |||||||
PCR_product | tm1817_external | |||||||
tm1817_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00055405 | |||||||
Laboratory | FX | |||||||
Author | Mitani S | |||||||
DB_info | Database | National_Bioresource_Project | seq | 1817 | ||||
NBP_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00008419 | ||||||
Transcript | D2030.9c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | D2030.9c.1:c.800+25_1012-128del | |||||||
Intron_number | 6-7/11 | |||||||
Exon_number | 7/12 | |||||||
D2030.9d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | D2030.9d.1:c.581+25_793-128del | |||||||
Intron_number | 3-4/7 | |||||||
Exon_number | 4/8 | |||||||
D2030.9a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | D2030.9a.1:c.800+25_1012-128del | |||||||
Intron_number | 6-7/11 | |||||||
Exon_number | 7/12 | |||||||
D2030.9e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | D2030.9e.1:c.581+25_793-128del | |||||||
Intron_number | 3-4/7 | |||||||
Exon_number | 4/8 | |||||||
D2030.9b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | D2030.9b.1:c.677+25_889-128del | |||||||
Intron_number | 5-6/10 | |||||||
Exon_number | 6/11 | |||||||
D2030.9a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | D2030.9a.2:c.800+25_1012-128del | |||||||
Intron_number | 6-7/11 | |||||||
Exon_number | 7/12 | |||||||
Interactor (12) | ||||||||
Isolation | Mutagen | TMP/UV | ||||||
Genetics | Map | I | ||||||
Description | Phenotype (13) | |||||||
Phenotype_not_observed (3) | ||||||||
Reference | WBPaper00042215 | |||||||
WBPaper00032980 | ||||||||
WBPaper00046904 | ||||||||
WBPaper00053621 | ||||||||
Remark | 34358/34359-34993/34994 (635 bp deletion) | |||||||
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
Method | NBP_knockout_allele |