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WormBase Tree Display for Variation: WBVar00251725

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Name Class

WBVar00251725NamePublic_nametm2912
Other_nameF02E8.3.1:c.268-38_423del
HGVSgCHROMOSOME_X:g.4458921_4459114del
Sequence_detailsSMapS_parentSequenceF02E8
Flanking_sequencescattgaaaagtttgtttctaacatggtattgaatagacagtcaagatggacccgttcaaa
Mapping_targetF02E8
Source_location7CHROMOSOME_X44589204459115Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm2912_external
tm2912_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq2912
NBP_allele
StatusLive
AffectsGeneWBGene00000157
TranscriptF02E8.3.1VEP_consequencesplice_acceptor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScF02E8.3.1:c.268-38_423del
cDNA_position?-423
CDS_position?-423
Protein_position?-141
Intron_number2/3
Exon_number3/4
InteractorWBInteraction000525183
IsolationMutagenTMP/UV
GeneticsMapX
Description (2)
ReferenceWBPaper00032011
Remark11246/11247-11440/11441 (194 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele