WormBase Tree Display for Variation: WBVar00275474
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| WBVar00275474 | Evidence | Paper_evidence | WBPaper00026825 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | zh20 | |||||||
| Other_name | F57C7.3b.1:c.33_688+3del | ||||||||
| F57C7.3a.1:c.33_691+3del | |||||||||
| HGVSg | CHROMOSOME_X:g.10591989_10593246del | ||||||||
| Sequence_details | SMap | S_parent | Sequence | F57C7 | |||||
| Flanking_sequences | gattctgaaactcaatttctgcctgtcgac | tgtgtgaagcaaaactcatttcaattaatt | |||||||
| Mapping_target | F57C7 | ||||||||
| Type_of_mutation | Deletion | ||||||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00000144 | ||||||||
| Laboratory | AH | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00004749 | |||||||
| Transcript | F57C7.3a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | F57C7.3a.1:c.33_691+3del | ||||||||
| cDNA_position | 89-? | ||||||||
| CDS_position | 33-? | ||||||||
| Protein_position | 11-? | ||||||||
| Intron_number | 2-6/7 | ||||||||
| Exon_number | 2-6/8 | ||||||||
| F57C7.3b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | F57C7.3b.1:c.33_688+3del | ||||||||
| cDNA_position | 89-? | ||||||||
| CDS_position | 33-? | ||||||||
| Protein_position | 11-? | ||||||||
| Intron_number | 2-6/7 | ||||||||
| Exon_number | 2-6/8 | ||||||||
| Interactor | WBInteraction000521943 | ||||||||
| WBInteraction000524031 | |||||||||
| WBInteraction000524032 | |||||||||
| WBInteraction000524555 | |||||||||
| WBInteraction000524820 | |||||||||
| WBInteraction000524822 | |||||||||
| Isolation | Mutagen | EMS | |||||||
| Genetics | Interpolated_map_position | X | 2.31377 | ||||||
| Description | Phenotype (14) | ||||||||
| Phenotype_not_observed | WBPhenotype:0000062 | Paper_evidence | WBPaper00026825 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | Non-lethal | Paper_evidence | WBPaper00026825 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Variation_effect | Null | Paper_evidence | WBPaper00026825 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0000604 | Paper_evidence | WBPaper00026825 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | The nervous system is grossly intact in all mutants | Paper_evidence | WBPaper00026825 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Variation_effect | Null | Paper_evidence | WBPaper00026825 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0005735 | PATO:0000460 | Paper_evidence | WBPaper00026825 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Phenotype_assay | Treatment | DiI staining | Paper_evidence | WBPaper00026825 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Genotype | oyIs17, zdIs5, otIs39, evIs82b, rhIs4 | Paper_evidence | WBPaper00026825 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Reference | WBPaper00031671 | ||||||||
| WBPaper00032413 | |||||||||
| WBPaper00026825 | |||||||||
| WBPaper00045926 | |||||||||
| Method | Deletion_allele |
