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WormBase Tree Display for Variation: WBVar00570651

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Name Class

WBVar00570651EvidencePaper_evidenceWBPaper00038208
NamePublic_nameWBVar00570651
Other_namehaw150786
cewivar00036239
Y54G2A.5a.1:c.319-297A>C
Y54G2A.5c.1:c.217-297A>C
Y54G2A.17a.1:c.-39+2162T>G
Y54G2A.5b.1:c.271-297A>C
HGVSgCHROMOSOME_IV:g.2888238A>C
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesAAAAACAAAAGTCAGCCATTTTAGCCAAAATTCGTAAACCCACTTCTCCTGGGGAGTACACGGGCTTCGTAAATCGGCACAAGCCGGTGTTAGAGGTTTA
Mapping_targetY54G2A
Type_of_mutationSubstitutionac
SeqStatusSequenced
Variation_typeSNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (25)
PersonWBPerson4037
AnalysisWGS_Yanai
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00021871
WBGene00021882
TranscriptY54G2A.5b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.5b.1:c.271-297A>C
Intron_number3/5
Y54G2A.5c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.5c.1:c.217-297A>C
Intron_number1/2
Y54G2A.17a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.1:c.-39+2162T>G
Intron_number1/8
Y54G2A.5a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.5a.1:c.319-297A>C
Intron_number3/5
ReferenceWBPaper00038208
MethodWGS_Yanai