WormBase Tree Display for Variation: WBVar00570651
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WBVar00570651 | Evidence | Paper_evidence | WBPaper00038208 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00570651 | |||
Other_name | haw150786 | ||||
cewivar00036239 | |||||
Y54G2A.5a.1:c.319-297A>C | |||||
Y54G2A.5c.1:c.217-297A>C | |||||
Y54G2A.17a.1:c.-39+2162T>G | |||||
Y54G2A.5b.1:c.271-297A>C | |||||
HGVSg | CHROMOSOME_IV:g.2888238A>C | ||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | |
Flanking_sequences | AAAAACAAAAGTCAGCCATTTTAGCCAAAATTCGTAAACCCACTTCTCCT | GGGGAGTACACGGGCTTCGTAAATCGGCACAAGCCGGTGTTAGAGGTTTA | |||
Mapping_target | Y54G2A | ||||
Type_of_mutation | Substitution | a | c | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (25) | |||||
Person | WBPerson4037 | ||||
Analysis | WGS_Yanai | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00021871 | |||
WBGene00021882 | |||||
Transcript | Y54G2A.5b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.5b.1:c.271-297A>C | ||||
Intron_number | 3/5 | ||||
Y54G2A.5c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.5c.1:c.217-297A>C | ||||
Intron_number | 1/2 | ||||
Y54G2A.17a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.17a.1:c.-39+2162T>G | ||||
Intron_number | 1/8 | ||||
Y54G2A.5a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.5a.1:c.319-297A>C | ||||
Intron_number | 3/5 | ||||
Reference | WBPaper00038208 | ||||
Method | WGS_Yanai |