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WormBase Tree Display for Variation: WBVar01451504

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Name Class

WBVar01451504EvidencePaper_evidenceWBPaper00040707
NamePublic_nameWBVar01451504
Other_namecewivar00036255
Y54G2A.36.4:c.-249+1306G>A
Y54G2A.36.3:c.-284+1306G>A
Y54G2A.36.2:c.-295+1306G>A
Y54G2A.36.5:c.-2085G>A
Y54G2A.36.1:c.-321+1306G>A
Y54G2A.20:n.1006+14C>T
HGVSgCHROMOSOME_IV:g.2899108G>A
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesAAAAAAAACTGAATTCTCAAATGAACTTTTTTTTATTGTAGACCTGCTGGCTCTCCTCTA
Mapping_targetY54G2A
Type_of_mutationSubstitutionga
SeqStatusSequenced
Variation_typeSNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (126)
LaboratoryQX
PersonWBPerson1730
AnalysisMillion_mutation_project_reanalysis
WGS_Andersen
DB_infoDatabasedbSNP_rsrs193337161
dbSNP_ssss295513080
StatusLive
AffectsGeneWBGene00021898
WBGene00021885
TranscriptY54G2A.36.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.2:c.-295+1306G>A
Intron_number1/4
Y54G2A.36.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.1:c.-321+1306G>A
Intron_number1/4
Y54G2A.36.5VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScY54G2A.36.5:c.-2085G>A
cDNA_position1005
Exon_number1/4
Y54G2A.36.4VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.4:c.-249+1306G>A
Intron_number1/5
Y54G2A.36.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.3:c.-284+1306G>A
Intron_number1/4
PseudogeneY54G2A.20VEP_consequenceintron_variant,non_coding_transcript_variant
VEP_impactMODIFIER
HGVScY54G2A.20:n.1006+14C>T
Intron_number5/13
ReferenceWBPaper00040707
MethodWGS_Andersen