WormBase Tree Display for Variation: WBVar01451504
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WBVar01451504 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01451504 | ||||
Other_name | cewivar00036255 | |||||
Y54G2A.36.4:c.-249+1306G>A | ||||||
Y54G2A.36.3:c.-284+1306G>A | ||||||
Y54G2A.36.2:c.-295+1306G>A | ||||||
Y54G2A.36.5:c.-2085G>A | ||||||
Y54G2A.36.1:c.-321+1306G>A | ||||||
Y54G2A.20:n.1006+14C>T | ||||||
HGVSg | CHROMOSOME_IV:g.2899108G>A | |||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||
Flanking_sequences | AAAAAAAACTGAATTCTCAAATGAACTTTT | TTTTATTGTAGACCTGCTGGCTCTCCTCTA | ||||
Mapping_target | Y54G2A | |||||
Type_of_mutation | Substitution | g | a | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain (126) | ||||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | Million_mutation_project_reanalysis | |||||
WGS_Andersen | ||||||
DB_info | Database | dbSNP_rs | rs | 193337161 | ||
dbSNP_ss | ss | 295513080 | ||||
Status | Live | |||||
Affects | Gene | WBGene00021898 | ||||
WBGene00021885 | ||||||
Transcript | Y54G2A.36.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | Y54G2A.36.2:c.-295+1306G>A | |||||
Intron_number | 1/4 | |||||
Y54G2A.36.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y54G2A.36.1:c.-321+1306G>A | |||||
Intron_number | 1/4 | |||||
Y54G2A.36.5 | VEP_consequence | 5_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y54G2A.36.5:c.-2085G>A | |||||
cDNA_position | 1005 | |||||
Exon_number | 1/4 | |||||
Y54G2A.36.4 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y54G2A.36.4:c.-249+1306G>A | |||||
Intron_number | 1/5 | |||||
Y54G2A.36.3 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y54G2A.36.3:c.-284+1306G>A | |||||
Intron_number | 1/4 | |||||
Pseudogene | Y54G2A.20 | VEP_consequence | intron_variant,non_coding_transcript_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | Y54G2A.20:n.1006+14C>T | |||||
Intron_number | 5/13 | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |