WormBase Tree Display for Variation: WBVar01468315
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| WBVar01468315 | Evidence | Paper_evidence | WBPaper00040707 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01468315 | ||||
| Other_name | F56B6.2b.1:c.1827-704C>T | |||||
| F56B6.2e.1:c.453-704C>T | ||||||
| F56B6.2a.1:c.1938-704C>T | ||||||
| F56B6.2j.1:c.1947-704C>T | ||||||
| F56B6.2i.1:c.1944-704C>T | ||||||
| F56B6.2h.1:c.1953-704C>T | ||||||
| F56B6.2c.1:c.753-704C>T | ||||||
| HGVSg | CHROMOSOME_X:g.3555736C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | F56B6 | ||
| Flanking_sequences | CATAGATCGATTCTGACCACAGTCGTAAAC | GGGTGTACACGACCAACTCTCCCGCGCGCT | ||||
| Mapping_target | F56B6 | |||||
| Type_of_mutation | Substitution | c | t | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00005299 | From_analysis | WGS_Andersen | |||
| WBStrain00005307 | From_analysis | WGS_Andersen | ||||
| WBStrain00030546 | From_analysis | WGS_Andersen | ||||
| WBStrain00030851 | From_analysis | WGS_Andersen | ||||
| Laboratory | QX | |||||
| Person | WBPerson1730 | |||||
| Analysis | WGS_Andersen | |||||
| DB_info | Database | dbSNP_rs | rs | 193353617 | ||
| dbSNP_ss | ss | 295529536 | ||||
| Status | Live | |||||
| Affects | Gene | WBGene00004350 | ||||
| Transcript | F56B6.2j.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | F56B6.2j.1:c.1947-704C>T | |||||
| Intron_number | 11/14 | |||||
| F56B6.2e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F56B6.2e.1:c.453-704C>T | |||||
| Intron_number | 3/7 | |||||
| F56B6.2i.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F56B6.2i.1:c.1944-704C>T | |||||
| Intron_number | 12/16 | |||||
| F56B6.2b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F56B6.2b.1:c.1827-704C>T | |||||
| Intron_number | 11/15 | |||||
| F56B6.2a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F56B6.2a.1:c.1938-704C>T | |||||
| Intron_number | 12/16 | |||||
| F56B6.2h.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F56B6.2h.1:c.1953-704C>T | |||||
| Intron_number | 12/16 | |||||
| F56B6.2c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F56B6.2c.1:c.753-704C>T | |||||
| Intron_number | 6/9 | |||||
| Reference | WBPaper00040707 | |||||
| Method | WGS_Andersen |
