WormBase Tree Display for Variation: WBVar01474281
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| WBVar01474281 | Evidence | Paper_evidence | WBPaper00042286 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | ox422 | |||||
| Other_name | CE28680:p.Lys215Ter | ||||||
| T20B5.1.1:c.643A>T | |||||||
| HGVSg | CHROMOSOME_X:g.9339780A>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | T20B5 | |||
| Flanking_sequences | tccgctgcttctctcattgaagctctttcc | agaagtggccagaagagtacaagggagccg | |||||
| Mapping_target | T20B5 | ||||||
| Type_of_mutation | Substitution | a | t | ||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Laboratory | EG | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00000161 | |||||
| Transcript | T20B5.1.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | T20B5.1.1:c.643A>T | ||||||
| HGVSp | CE28680:p.Lys215Ter | ||||||
| cDNA_position | 646 | ||||||
| CDS_position | 643 | ||||||
| Protein_position | 215 | ||||||
| Exon_number | 5/10 | ||||||
| Codon_change | Aag/Tag | ||||||
| Amino_acid_change | K/* | ||||||
| Interactor | WBInteraction000520107 | ||||||
| WBInteraction000520110 | |||||||
| WBInteraction000520112 | |||||||
| WBInteraction000525182 | |||||||
| Genetics | Interpolated_map_position | X | 1.03202 | ||||
| Description | Phenotype (14) | ||||||
| Phenotype_not_observed | WBPhenotype:0000062 | Paper_evidence | WBPaper00042286 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | worms missing alpha-adaptin in C. elegans are viable | Paper_evidence | WBPaper00042286 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Reference | WBPaper00042286 | ||||||
| Method | Substitution_allele |
