WormBase Tree Display for Variation: WBVar01609404
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WBVar01609404 | Name | Public_name | WBVar01609404 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00288578 | |||||||
Y54G2A.5b.1:c.67G>C | ||||||||
CE48813:p.Ala5Pro | ||||||||
Y54G2A.17a.1:c.-39+2970C>G | ||||||||
Y54G2A.5c.1:c.13G>C | ||||||||
Y54G2A.5a.1:c.115G>C | ||||||||
CE33889:p.Ala23Pro | ||||||||
CE48099:p.Ala39Pro | ||||||||
HGVSg | CHROMOSOME_IV:g.2887430G>C | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | TTAGCCGGGCTCAACGAGATGCCGGCGCCA | CAGTAGCAGCTCAAAGCATCGGAGGTCAGA | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2887428 | 2887428 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | G | C | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00022887 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021871 | ||||||
WBGene00021882 | ||||||||
Transcript | Y54G2A.5b.1 | VEP_consequence | missense_variant | |||||
VEP_impact | MODERATE | |||||||
SIFT | 0.29 | tolerated_low_confidence | ||||||
PolyPhen | 0.684 | possibly_damaging | ||||||
HGVSc | Y54G2A.5b.1:c.67G>C | |||||||
HGVSp | CE33889:p.Ala23Pro | |||||||
cDNA_position | 164 | |||||||
CDS_position | 67 | |||||||
Protein_position | 23 | |||||||
Exon_number | 3/6 | |||||||
Codon_change | Gca/Cca | |||||||
Amino_acid_change | A/P | |||||||
Y54G2A.5c.1 (12) | ||||||||
Y54G2A.17a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.17a.1:c.-39+2970C>G | |||||||
Intron_number | 1/8 | |||||||
Y54G2A.5a.1 (12) | ||||||||
Method | WGS_Flibotte |