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WormBase Tree Display for Variation: WBVar01726648

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Name Class

WBVar01726648NamePublic_nameWBVar01726648
Other_namecewivar00425025
Y54G2A.36.1:c.-321+465C>T
Y54G2A.20:n.1572G>A
Y54G2A.36.4:c.-249+465C>T
Y54G2A.36.3:c.-284+465C>T
Y54G2A.36.2:c.-295+465C>T
Y54G2A.36.5:c.-2926C>T
HGVSgCHROMOSOME_IV:g.2898267C>T
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesTTTGTGAAACTGTCGGCATTTGCTGTGGTTTGTCCTTTTCTGGGACAGGCCGCATACATA
Mapping_targetY54G2A
Source_location225CHROMOSOME_IV28982652898265From_analysisMillion_mutation_project_reanalysis
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeNatural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00023139From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
WBStrain00027662From_analysisMillion_mutation_project_reanalysis
LaboratoryVC
AnalysisMillion_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00021898
WBGene00021885
TranscriptY54G2A.36.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.2:c.-295+465C>T
Intron_number1/4
Y54G2A.36.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.1:c.-321+465C>T
Intron_number1/4
Y54G2A.36.5VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScY54G2A.36.5:c.-2926C>T
cDNA_position164
Exon_number1/4
Y54G2A.36.4VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.4:c.-249+465C>T
Intron_number1/5
Y54G2A.36.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.3:c.-284+465C>T
Intron_number1/4
PseudogeneY54G2A.20VEP_consequencenon_coding_transcript_exon_variant
VEP_impactMODIFIER
HGVScY54G2A.20:n.1572G>A
cDNA_position1572
Exon_number10/14
MethodWGS_Flibotte