WormBase Tree Display for Variation: WBVar01726648
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WBVar01726648 | Name | Public_name | WBVar01726648 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00425025 | |||||||
Y54G2A.36.1:c.-321+465C>T | ||||||||
Y54G2A.20:n.1572G>A | ||||||||
Y54G2A.36.4:c.-249+465C>T | ||||||||
Y54G2A.36.3:c.-284+465C>T | ||||||||
Y54G2A.36.2:c.-295+465C>T | ||||||||
Y54G2A.36.5:c.-2926C>T | ||||||||
HGVSg | CHROMOSOME_IV:g.2898267C>T | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | TTTGTGAAACTGTCGGCATTTGCTGTGGTT | TGTCCTTTTCTGGGACAGGCCGCATACATA | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2898265 | 2898265 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | C | T | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021898 | ||||||
WBGene00021885 | ||||||||
Transcript | Y54G2A.36.2 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.36.2:c.-295+465C>T | |||||||
Intron_number | 1/4 | |||||||
Y54G2A.36.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.36.1:c.-321+465C>T | |||||||
Intron_number | 1/4 | |||||||
Y54G2A.36.5 | VEP_consequence | 5_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.36.5:c.-2926C>T | |||||||
cDNA_position | 164 | |||||||
Exon_number | 1/4 | |||||||
Y54G2A.36.4 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.36.4:c.-249+465C>T | |||||||
Intron_number | 1/5 | |||||||
Y54G2A.36.3 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.36.3:c.-284+465C>T | |||||||
Intron_number | 1/4 | |||||||
Pseudogene | Y54G2A.20 | VEP_consequence | non_coding_transcript_exon_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.20:n.1572G>A | |||||||
cDNA_position | 1572 | |||||||
Exon_number | 10/14 | |||||||
Method | WGS_Flibotte |