WormBase Tree Display for Variation: WBVar01838981
expand all nodes | collapse all nodes | view schema
WBVar01838981 | Name | Public_name | WBVar01838981 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00551455 | |||||||
Y54G2A.5b.1:c.459G>A | ||||||||
CE48099:p.Lys169= | ||||||||
CE48813:p.Lys135= | ||||||||
Y54G2A.5c.1:c.405G>A | ||||||||
CE33889:p.Lys153= | ||||||||
Y54G2A.17a.1:c.-39+1677C>T | ||||||||
Y54G2A.5a.1:c.507G>A | ||||||||
HGVSg | CHROMOSOME_IV:g.2888723G>A | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | GGCGGCTCCAAAGTTCGCGTCGACACCGAA | CCAGATGGGATTCGTAGATCGATGGTGGAT | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2888721 | 2888721 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | G | A | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021871 | ||||||
WBGene00021882 | ||||||||
Transcript | Y54G2A.5b.1 | VEP_consequence | synonymous_variant | |||||
VEP_impact | LOW | |||||||
HGVSc | Y54G2A.5b.1:c.459G>A | |||||||
HGVSp | CE33889:p.Lys153= | |||||||
cDNA_position | 556 | |||||||
CDS_position | 459 | |||||||
Protein_position | 153 | |||||||
Exon_number | 4/6 | |||||||
Codon_change | aaG/aaA | |||||||
Amino_acid_change | K | |||||||
Y54G2A.5c.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | Y54G2A.5c.1:c.405G>A | |||||||
HGVSp | CE48813:p.Lys135= | |||||||
cDNA_position | 405 | |||||||
CDS_position | 405 | |||||||
Protein_position | 135 | |||||||
Exon_number | 2/3 | |||||||
Codon_change | aaG/aaA | |||||||
Amino_acid_change | K | |||||||
Y54G2A.17a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.17a.1:c.-39+1677C>T | |||||||
Intron_number | 1/8 | |||||||
Y54G2A.5a.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | Y54G2A.5a.1:c.507G>A | |||||||
HGVSp | CE48099:p.Lys169= | |||||||
cDNA_position | 523 | |||||||
CDS_position | 507 | |||||||
Protein_position | 169 | |||||||
Exon_number | 4/6 | |||||||
Codon_change | aaG/aaA | |||||||
Amino_acid_change | K | |||||||
Method | WGS_Flibotte |