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WormBase Tree Display for Variation: WBVar01838981

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Name Class

WBVar01838981NamePublic_nameWBVar01838981
Other_namecewivar00551455
Y54G2A.5b.1:c.459G>A
CE48099:p.Lys169=
CE48813:p.Lys135=
Y54G2A.5c.1:c.405G>A
CE33889:p.Lys153=
Y54G2A.17a.1:c.-39+1677C>T
Y54G2A.5a.1:c.507G>A
HGVSgCHROMOSOME_IV:g.2888723G>A
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesGGCGGCTCCAAAGTTCGCGTCGACACCGAACCAGATGGGATTCGTAGATCGATGGTGGAT
Mapping_targetY54G2A
Source_location225CHROMOSOME_IV28887212888721From_analysisMillion_mutation_project_reanalysis
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeNatural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00022930From_analysisMillion_mutation_project_reanalysis
LaboratoryVC
AnalysisMillion_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00021871
WBGene00021882
TranscriptY54G2A.5b.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY54G2A.5b.1:c.459G>A
HGVSpCE33889:p.Lys153=
cDNA_position556
CDS_position459
Protein_position153
Exon_number4/6
Codon_changeaaG/aaA
Amino_acid_changeK
Y54G2A.5c.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY54G2A.5c.1:c.405G>A
HGVSpCE48813:p.Lys135=
cDNA_position405
CDS_position405
Protein_position135
Exon_number2/3
Codon_changeaaG/aaA
Amino_acid_changeK
Y54G2A.17a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.1:c.-39+1677C>T
Intron_number1/8
Y54G2A.5a.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY54G2A.5a.1:c.507G>A
HGVSpCE48099:p.Lys169=
cDNA_position523
CDS_position507
Protein_position169
Exon_number4/6
Codon_changeaaG/aaA
Amino_acid_changeK
MethodWGS_Flibotte