WormBase Tree Display for Variation: WBVar02082258
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WBVar02082258 | Name | Public_name | WBVar02082258 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00811891 | |||||||
CE33889:p.Gln2_Ile6delinsAsnGlySerVal | ||||||||
Y54G2A.5b.1:c.4_16delinsAATGGTTCGG | ||||||||
Y54G2A.17a.1:c.-39+3333_-39+3345delinsCCGAACCATT | ||||||||
CE48099:p.Gln2_Ile6delinsAsnGlySerVal | ||||||||
Y54G2A.5a.1:c.4_16delinsAATGGTTCGG | ||||||||
HGVSg | CHROMOSOME_IV:g.2887055_2887067delinsAATGGTTCGG | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | TTTCATATTTGTTGTAAGCTATAGGAAATG | TAAAGCAGGTGAGTGCTGTACTCTACTTGA | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2887053 | 2887065 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Insertion | AATGGTTCGG | ||||||
Deletion | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain (12) | ||||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021871 | ||||||
WBGene00021882 | ||||||||
Transcript | Y54G2A.5b.1 | VEP_consequence | protein_altering_variant | |||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.5b.1:c.4_16delinsAATGGTTCGG | |||||||
HGVSp | CE33889:p.Gln2_Ile6delinsAsnGlySerVal | |||||||
cDNA_position | 101-113 | |||||||
CDS_position | 4-16 | |||||||
Protein_position | 2-6 | |||||||
Exon_number | 2/6 | |||||||
Codon_change | CAGAAATTTTCAAta/AATGGTTCGGta | |||||||
Amino_acid_change | QKFSI/NGSV | |||||||
Y54G2A.17a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.17a.1:c.-39+3333_-39+3345delinsCCGAACCATT | |||||||
Intron_number | 1/8 | |||||||
Y54G2A.5a.1 | VEP_consequence | protein_altering_variant | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.5a.1:c.4_16delinsAATGGTTCGG | |||||||
HGVSp | CE48099:p.Gln2_Ile6delinsAsnGlySerVal | |||||||
cDNA_position | 20-32 | |||||||
CDS_position | 4-16 | |||||||
Protein_position | 2-6 | |||||||
Exon_number | 2/6 | |||||||
Codon_change | CAGAAATTTTCAAta/AATGGTTCGGta | |||||||
Amino_acid_change | QKFSI/NGSV | |||||||
Method | WGS_Flibotte |