Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar02132146

expand all nodes | collapse all nodes | view schema

Name Class

WBVar02132146EvidencePaper_evidenceWBPaper00045317
NamePublic_nameh5956
Other_nameCE54103:p.Ser561=
CE30134:p.Ser524=
F47D12.1b.1:c.1560+123G>A
F47D12.1e.1:c.720+123G>A
F47D12.1a.1:c.1572G>A
F47D12.1c.1:c.1683G>A
HGVSgCHROMOSOME_III:g.6319579G>A
Sequence_detailsSMapS_parentSequenceF47D12
Flanking_sequencesATCCGGTCACAATTACACTACAATTTCAGAGTGTCTTATCGCTCTTAATTTTTTTCAACGAAAAAAGGTAACACGGGTGT
Mapping_targetCHROMOSOME_III
Source_location200CHROMOSOME_III63195236319523
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00023685
LaboratoryKR
AnalysisWGS_Rose
StatusLive
AffectsGeneWBGene00001518
TranscriptF47D12.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF47D12.1b.1:c.1560+123G>A
Intron_number11/12
F47D12.1e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF47D12.1e.1:c.720+123G>A
Intron_number6/7
F47D12.1a.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF47D12.1a.1:c.1572G>A
HGVSpCE30134:p.Ser524=
cDNA_position1615
CDS_position1572
Protein_position524
Exon_number12/14
Codon_changetcG/tcA
Amino_acid_changeS
F47D12.1c.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF47D12.1c.1:c.1683G>A
HGVSpCE54103:p.Ser561=
cDNA_position1728
CDS_position1683
Protein_position561
Exon_number11/13
Codon_changetcG/tcA
Amino_acid_changeS
ReferenceWBPaper00040589
WBPaper00000975
WBPaper00003985
WBPaper00000699
WBPaper00045317
MethodWGS_Rose