WormBase Tree Display for Variation: WBVar02153758
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WBVar02153758 | Name | Public_name | gk5537 | ||
---|---|---|---|---|---|
Other_name | Y54G2A.2b.1:c.373_1285del | ||||
CE37292:p.Gly125TrpfsTer16 | |||||
CE26776:p.Gly125TrpfsTer16 | |||||
Y54G2A.2a.1:c.373_1285del | |||||
HGVSg | CHROMOSOME_IV:g.2790557_2794717del | ||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | |
Flanking_sequences | AATTCTCCATTATCCGGATTCTCGTGGCGT | TGGAACGGTTGGAATCTGATTTGCAGGTAA | |||
Mapping_target | CHROMOSOME_IV | ||||
Type_of_mutation | Deletion | ||||
SeqStatus | Pending_curation | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00047686 | ||||
Laboratory | VC | ||||
Person | WBPerson427 | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00021868 | |||
Transcript | Y54G2A.2c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
VEP_impact | HIGH | ||||
cDNA_position | ?-448 | ||||
CDS_position | ?-448 | ||||
Protein_position | ?-150 | ||||
Intron_number | 1-2/4 | ||||
Exon_number | 1-3/5 | ||||
Y54G2A.2a.1 (11) | |||||
Y54G2A.2b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | Y54G2A.2b.1:c.373_1285del | ||||
HGVSp | CE37292:p.Gly125TrpfsTer16 | ||||
cDNA_position | 385-1297 | ||||
CDS_position | 373-1285 | ||||
Protein_position | 125-429 | ||||
Intron_number | 4-8/11 | ||||
Exon_number | 4-9/12 | ||||
Codon_change | GGTGGAAGTGAACGTGATACTAATGGAATACTTATTTGGAGTGAACCATTCATTATGAAGGATAAAAATGGAGAGGAGGTGCCGAATTTTATCTATAAAAAACGTTTAAAAAATCTAGAACTTCCATGTAGTCCCCCCCCCCCCTACATGCCTGACCTTAAGGCGACCTCCGCCTGCCGCTTGCCGTATGCTAAACATCCGTTTTTTCATATCAATTTGATCTTCATCAAATTGATTAGAAATTTTGAAAATTTACGTAAAAATGTTTGAAGAAAAAAAAAGAGACGAAAGGCAGGCGTCAGGCCCTGAAACGGTGCCTGCCTACCATGGAAACTCTGAAAATATGTTTTAAAGGTGGGGTACAGAAATTTTTTTGCTTTTTTAGACCCAAAATGGTCCAAAACTACCAAATTTCGTAATGAGACGTTCTGAAAATTTTTCAAAAAAAAGTTATGGTCGCTCAAAGTTTCGGAAAAAATGGCCCATTTTAGCTAAAATCTCAGATTTTGGCAACTTCTCGGTGTCACAGCGATTGGAAATTAATTTTTATTTGATTATCATCCTTTAATGCATGTTTTGGCATTTTATTACGTGTTATTTCGTTGATTGAGATGGTTTTTTGGTCGATGGGGACGCAAAATTGTATCATATTTGTGCCCGCCGCATCGACCGAAAAACCATCTCAGCCAACGAAATAACATTTAATAAAGTGCCAAAATATGCATTAAATGATGATAATCAAATAAAAATTAAATTCCAACTGCTGCGCGACACCGAGAAGTTACCAAAATCTGAGATTTTAGCTAAAAATGGACCGTTTTTTCCAAAACTTTGAGGGGTCATACCTTTTTTTTTTGGGAAATTTTCAGAACGTTTCATTACGAAATTTGGTAGTTTTGGGCCATTTTGGGTCTGAAAAAGCAAAGTCTCAAATTTCGGTACTCCATGTTTAAATTTGAAATTGTGTGTGAAATTTGATCGAATATATTATTATTCATTCAAAATTTGCATAGAATATTGATTTTCTCGCTGCAGCAGTATCTCTCTAAAATTCGCTTTTTCCACAGATTGCCGTTCTCCTTATGGACACACAAGGAGCATTTGATTCACAATCGACTGTCAAGGATTGTGCTACGATTTTCGCACTTTCCACTATGATTTCCAGTGTTCAGGTATCAAAAAAAACTAGAAAACTACAAAAATTTTACTCTAAATTACAGTTTTATATTGATAAAATTCGCGTAAAAACTACACAAAAAAATTATGAATTAATACAAAATCAGTTTTCCTAACGAAATTTGCTGATTTTTCAGTAGAAAAAACGCTTAAAATGCAGAAAGTTTGTCCGGTAGATGCAAGAATTTCTAAACAAAAAACCCCCTTTTTTTCGGGAAACCAACGAAAATGCTGAGAATTGTTAATTTTTAATTTTAAAATCTATATTTTGTAGTTAAAATTCAATTTGTTTCACTAAAATTTGATTTATCTGTTGCAAAACATTCGAATTGACTACATTAGGCAAAAAACCTTGAAAAAATCACTCAAAACGAAGTCGAAGTGCCAACTTTGTTAGAAAAATTGCAAAAAAAATGTCTGGAAATTGCTGAAACAGGCAAAAGTGTCGTGAGAATGGCTCAAATATGTCTAAAAAAGATAATTATACTAAAGAAGAGAATTTTCGAGAGAAAATCAGCATTTTTCTCAATTTCCAGATCTACAATCTGTCGCAAAACATTCAAGAAGACGACCTACAACATCTTCAACTTTTCACCGAATACGGACGTTTGGCATTAGAAGATTCAGCCTCAAAACCCTTCCAATCGCTTCTTTTCCTCGTTCGTGATTGGTCATTCCCGTATGAAGCGGAATTCGGATTTCAAGGAGGGCAACGTGTACTTGATAGACGTCTTGAGGTGATTTTTACGCTGAACATCAGTTGAAAATCCGGCACTGCAACCTTTTCCTCACGAGGGACGAGGAAAAGTGGTTTCTAGGCCATGGCCGAGGGGCCGACAAGTTTCAGCGGCCATTTATCTTGCTTTGTTTTCCGCCTGTTTTCTTTTGTTTTTCATCGATTTTTTCCGTTTTTTCTTATTAAAACTGATAAATAAATACTTTTTGCAGATGCTAAAACAATTTCCAAGAAAAAATCATGTATTCAGTGGGCAAGCAGCGGTGAAAGTGGGCAATGTAAAATGATGGATTACGGGAAAACAAAACCTAAACTTTTTCTGAAACATGATACATATGCTGCTTAAATGCTGAGACTACCTGATTTTCATAACGAGACCGCTGAAAAAGTTTTGAGGTTTTCAAAATTCAACTTTTTGTGCGAAAATCTCGACTTTTCACCAAAAAAGTTGAATTTTGGAAACCTCAAAACTTTTTCAGCGGTCTTGATATGAAAATCAGGTAGTCTCAGCATTTAAGCAGCATATGTATCATGTTTCAGAAAAAGTTTAGGTTTTGTATTCCCGTAATCCATCATTTTACATTGACCACTTTCACCGCTGCTTGCCCACTGAATACATATTTTTTTACTTGGAAATCGTTTTGGCATCTGCAAAAAATATTTATTTATCAGTTTTAATAAGAAAAAACGGGAAAAAGCTGTAAAAAACGAAAGAAAACAGGCGGAAAACAAAGCAAGATAAATGGCCGCTGAAACTTGTCGGCCCCTCGGCCATGGCCTAGAAACCACTTTTCCTCGTCCCTCGTGAGGAAAAAGTTGCAGTGAATCCGGCAATTTCCCTCATTTTATGGCTAAAACATCACATTTTCAAAATTTCAGGTGTCCGAAAAGCAGCACGCGGAGCTCCAACAACTTCGTCAGCACATTCGTTCGTGTTTCGAGGATATTCGATGCTTCTTGATGCCTCATCCCGGCCTTAAAGTTGCCACAAATCCGAATTTCGACGGAAAACTCGTTGGTAAGTTGTGCAAAAATTCAGAAAAAAAACGGAAGTTATTCACGAAAAAACGAGGATTTTGCATTTGGAAATCATGAAAGTCAGTCAGATTCTGAAGTAGAAGATTTGTGAAAAAAGCGCTGAAAAGCACCAAAAATTGCGTGTTTTTTTTTCAAATTTTCTGACCAAGCAGGCAAAAAAAATTACAATTTTATGTTCGAAATTTTCATTGAAAAGTGAAAAACAATAGTGAAATCCGAAGATTTTCAGTCAAAGATCTCATTTTTCCAGATATCGAGAATGAATTCCAGCAACAACTCGGCGTAATGATCCCAAGGCTTTTGGATTCACACGCTCTCGTTCATAAGGAGATTAACGGTCAAAAGATGACGTGCCGGGAGCTTCTCGAGTACTTTAAGGCTTATATGCACATTTTCAGAGGTAAAATTGACAGAAAAACTGATTTTTTAATGTGAAAAATATTGAAAATTAGACTAAAGCCATGTGGCGCATCTGTAAAAATGTTCAAAGGAGAATTAATTCAAAACTTCCAAGAAAGCCAGAAATCCAGAAAAATCACAAAAAAAAACTTAAAAATTGAAAAATTATACTTTAAAAATCGAGATTTTGCAATTTCTTCCAAAATTTGAACTTCGACCAATCATCGATTCGCTCCGCCCACTTTAGCAGAGTTCAACTGCGCTGATTGGTCGGAGAGTTCATATTTTGGAGGGAGATTTGTAAAAATTGAAAAAGTGCGTTTTTTTTTTCGTTTTGGGAATTTTCTTAGTTTCTGAATATTTTGGATTTTTTGAAGTAAAATCCACAGTCATAATTTTTAAATGAACTTTTTTTTTACAGATGAATTTTTCTATTAAAAATCTGGGAAAATTTAGATTTTTGCGGGTTTTTTGGAAAAATATTTGCATTCACAGAAATCTGAAAATTTTAACAGAAAAATGTGTATTTACAATTTTCTAAGCTGAAACACTGAAAATTAATTTCCCTTTAGGCCAAGACCTCCCGGAGCCAAAATCCATGTTAATGGCCACTGCCGAAGCGAACAACTTGGCCGCTGTCGCCTCTGCTCGTGCAGTTTATCAACGAGAAATGGAAGAAGTTTGTGGTGGAGATACCCCATATATGTCTACAAATGAGCTCTTGGAGCATCATGATCGAGTGAAGAATATCGCGATTCGCGAGTTTAGAAATGCTCGGAAGATGGGCGGTGTGGACTTTTCGATGCAATTCTtg/tg | ||||
Amino_acid_change | GGSERDTNGILIWSEPFIMKDKNGEEVPNFIYKKRLKNLELPCSPPPPYMPDLKATSACRLPYAKHPFFHINLIFIKLIRNFENLRKNV*RKKKRRKAGVRP*NGACLPWKL*KYVLKVGYRNFFAFLDPKWSKTTKFRNETF*KFFKKKLWSLKVSEKMAHFS*NLRFWQLLGVTAIGN*FLFDYHPLMHVLAFYYVLFR*LRWFFGRWGRKIVSYLCPPHRPKNHLSQRNNI**SAKICIK***SNKN*IPTAARHREVTKI*DFS*KWTVFSKTLRGHTFFFWEIFRTFHYEIW*FWAILGLKKQSLKFRYSMFKFEIVCEI*SNILLFIQNLHRILIFSLQQYLSKIRFFHRLPFSLWTHKEHLIHNRLSRIVLRFSHFPL*FPVFRYQKKLENYKNFTLNYSFILIKFA*KLHKKIMN*YKISFPNEIC*FFSRKNA*NAESLSGRCKNF*TKNPLFFGKPTKMLRIVNF*F*NLYFVVKIQFVSLKFDLSVAKHSN*LH*AKNLEKITQNEVEVPTLLEKLQKKCLEIAETGKSVVRMAQICLKKIIILKKRIFERKSAFFSISRSTICRKTFKKTTYNIFNFSPNTDVWH*KIQPQNPSNRFFSSFVIGHSRMKRNSDFKEGNVYLIDVLR*FLR*TSVENPALQPFPHEGRGKVVSRPWPRGRQVSAAIYLALFSACFLLFFIDFFRFFLLKLINKYFLQMLKQFPRKNHVFSGQAAVKVGNVK*WITGKQNLNFF*NMIHMLLKC*DYLIFITRPLKKF*GFQNSTFCAKISTFHQKS*ILETSKLFQRS*YENQVVSAFKQHMYHVSEKV*VLYSRNPSFYIDHFHRCLPTEYIFFYLEIVLASAKNIYLSVLIRKNGKKL*KTKENRRKTKQDKWPLKLVGPSAMA*KPLFLVPREEKVAVNPAISLILWLKHHIFKISGVRKAARGAPTTSSAHSFVFRGYSMLLDASSRP*SCHKSEFRRKTRW*VVQKFRKKTEVIHEKTRILHLEIMKVSQILK*KICEKSAEKHQKLRVFFSNFLTKQAKKITILCSKFSLKSEKQ**NPKIFSQRSHFSRYRE*IPATTRRNDPKAFGFTRSRS*GD*RSKDDVPGASRVL*GLYAHFQR*N*QKN*FFNVKNIEN*TKAMWRICKNVQRRINSKLPRKPEIQKNHKKKLKN*KIIL*KSRFCNFFQNLNFDQSSIRSAHFSRVQLR*LVGEFIFWREICKN*KSAFFFSFWEFS*FLNILDFLK*NPQS*FLNELFFYR*IFLLKIWENLDFCGFFGKIFAFTEI*KF*QKNVYLQFSKLKH*KLISL*AKTSRSQNPC*WPLPKRTTWPLSPLLVQFINEKWKKFVVEIPHICLQMSSWSIMIE*RISRFASLEMLGRWAVWTFRCNSX/X | ||||
Isolation | Mutagen | CRISPR_Cas9 | |||
Genetics | Interpolated_map_position | IV | -6.7398 | ||
Remark | Batch created from Strain genotype data | Curator_confirmed | WBPerson1983 | ||
Deletion_verification Flanking sequences and deletion extents inferred from design of CRISPR deletion/selection cassette insertion HDR event. QC-PCR assays indicate that the event is imperfect, but it was not sequenced. | |||||
Method | Deletion_allele |