Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar02153758

expand all nodes | collapse all nodes | view schema

Name Class

WBVar02153758NamePublic_namegk5537
Other_nameY54G2A.2b.1:c.373_1285del
CE37292:p.Gly125TrpfsTer16
CE26776:p.Gly125TrpfsTer16
Y54G2A.2a.1:c.373_1285del
HGVSgCHROMOSOME_IV:g.2790557_2794717del
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesAATTCTCCATTATCCGGATTCTCGTGGCGTTGGAACGGTTGGAATCTGATTTGCAGGTAA
Mapping_targetCHROMOSOME_IV
Type_of_mutationDeletion
SeqStatusPending_curation
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00047686
LaboratoryVC
PersonWBPerson427
KO_consortium_allele
StatusLive
AffectsGeneWBGene00021868
TranscriptY54G2A.2c.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
cDNA_position?-448
CDS_position?-448
Protein_position?-150
Intron_number1-2/4
Exon_number1-3/5
Y54G2A.2a.1 (11)
Y54G2A.2b.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant
VEP_impactHIGH
HGVScY54G2A.2b.1:c.373_1285del
HGVSpCE37292:p.Gly125TrpfsTer16
cDNA_position385-1297
CDS_position373-1285
Protein_position125-429
Intron_number4-8/11
Exon_number4-9/12
Codon_changeGGTGGAAGTGAACGTGATACTAATGGAATACTTATTTGGAGTGAACCATTCATTATGAAGGATAAAAATGGAGAGGAGGTGCCGAATTTTATCTATAAAAAACGTTTAAAAAATCTAGAACTTCCATGTAGTCCCCCCCCCCCCTACATGCCTGACCTTAAGGCGACCTCCGCCTGCCGCTTGCCGTATGCTAAACATCCGTTTTTTCATATCAATTTGATCTTCATCAAATTGATTAGAAATTTTGAAAATTTACGTAAAAATGTTTGAAGAAAAAAAAAGAGACGAAAGGCAGGCGTCAGGCCCTGAAACGGTGCCTGCCTACCATGGAAACTCTGAAAATATGTTTTAAAGGTGGGGTACAGAAATTTTTTTGCTTTTTTAGACCCAAAATGGTCCAAAACTACCAAATTTCGTAATGAGACGTTCTGAAAATTTTTCAAAAAAAAGTTATGGTCGCTCAAAGTTTCGGAAAAAATGGCCCATTTTAGCTAAAATCTCAGATTTTGGCAACTTCTCGGTGTCACAGCGATTGGAAATTAATTTTTATTTGATTATCATCCTTTAATGCATGTTTTGGCATTTTATTACGTGTTATTTCGTTGATTGAGATGGTTTTTTGGTCGATGGGGACGCAAAATTGTATCATATTTGTGCCCGCCGCATCGACCGAAAAACCATCTCAGCCAACGAAATAACATTTAATAAAGTGCCAAAATATGCATTAAATGATGATAATCAAATAAAAATTAAATTCCAACTGCTGCGCGACACCGAGAAGTTACCAAAATCTGAGATTTTAGCTAAAAATGGACCGTTTTTTCCAAAACTTTGAGGGGTCATACCTTTTTTTTTTGGGAAATTTTCAGAACGTTTCATTACGAAATTTGGTAGTTTTGGGCCATTTTGGGTCTGAAAAAGCAAAGTCTCAAATTTCGGTACTCCATGTTTAAATTTGAAATTGTGTGTGAAATTTGATCGAATATATTATTATTCATTCAAAATTTGCATAGAATATTGATTTTCTCGCTGCAGCAGTATCTCTCTAAAATTCGCTTTTTCCACAGATTGCCGTTCTCCTTATGGACACACAAGGAGCATTTGATTCACAATCGACTGTCAAGGATTGTGCTACGATTTTCGCACTTTCCACTATGATTTCCAGTGTTCAGGTATCAAAAAAAACTAGAAAACTACAAAAATTTTACTCTAAATTACAGTTTTATATTGATAAAATTCGCGTAAAAACTACACAAAAAAATTATGAATTAATACAAAATCAGTTTTCCTAACGAAATTTGCTGATTTTTCAGTAGAAAAAACGCTTAAAATGCAGAAAGTTTGTCCGGTAGATGCAAGAATTTCTAAACAAAAAACCCCCTTTTTTTCGGGAAACCAACGAAAATGCTGAGAATTGTTAATTTTTAATTTTAAAATCTATATTTTGTAGTTAAAATTCAATTTGTTTCACTAAAATTTGATTTATCTGTTGCAAAACATTCGAATTGACTACATTAGGCAAAAAACCTTGAAAAAATCACTCAAAACGAAGTCGAAGTGCCAACTTTGTTAGAAAAATTGCAAAAAAAATGTCTGGAAATTGCTGAAACAGGCAAAAGTGTCGTGAGAATGGCTCAAATATGTCTAAAAAAGATAATTATACTAAAGAAGAGAATTTTCGAGAGAAAATCAGCATTTTTCTCAATTTCCAGATCTACAATCTGTCGCAAAACATTCAAGAAGACGACCTACAACATCTTCAACTTTTCACCGAATACGGACGTTTGGCATTAGAAGATTCAGCCTCAAAACCCTTCCAATCGCTTCTTTTCCTCGTTCGTGATTGGTCATTCCCGTATGAAGCGGAATTCGGATTTCAAGGAGGGCAACGTGTACTTGATAGACGTCTTGAGGTGATTTTTACGCTGAACATCAGTTGAAAATCCGGCACTGCAACCTTTTCCTCACGAGGGACGAGGAAAAGTGGTTTCTAGGCCATGGCCGAGGGGCCGACAAGTTTCAGCGGCCATTTATCTTGCTTTGTTTTCCGCCTGTTTTCTTTTGTTTTTCATCGATTTTTTCCGTTTTTTCTTATTAAAACTGATAAATAAATACTTTTTGCAGATGCTAAAACAATTTCCAAGAAAAAATCATGTATTCAGTGGGCAAGCAGCGGTGAAAGTGGGCAATGTAAAATGATGGATTACGGGAAAACAAAACCTAAACTTTTTCTGAAACATGATACATATGCTGCTTAAATGCTGAGACTACCTGATTTTCATAACGAGACCGCTGAAAAAGTTTTGAGGTTTTCAAAATTCAACTTTTTGTGCGAAAATCTCGACTTTTCACCAAAAAAGTTGAATTTTGGAAACCTCAAAACTTTTTCAGCGGTCTTGATATGAAAATCAGGTAGTCTCAGCATTTAAGCAGCATATGTATCATGTTTCAGAAAAAGTTTAGGTTTTGTATTCCCGTAATCCATCATTTTACATTGACCACTTTCACCGCTGCTTGCCCACTGAATACATATTTTTTTACTTGGAAATCGTTTTGGCATCTGCAAAAAATATTTATTTATCAGTTTTAATAAGAAAAAACGGGAAAAAGCTGTAAAAAACGAAAGAAAACAGGCGGAAAACAAAGCAAGATAAATGGCCGCTGAAACTTGTCGGCCCCTCGGCCATGGCCTAGAAACCACTTTTCCTCGTCCCTCGTGAGGAAAAAGTTGCAGTGAATCCGGCAATTTCCCTCATTTTATGGCTAAAACATCACATTTTCAAAATTTCAGGTGTCCGAAAAGCAGCACGCGGAGCTCCAACAACTTCGTCAGCACATTCGTTCGTGTTTCGAGGATATTCGATGCTTCTTGATGCCTCATCCCGGCCTTAAAGTTGCCACAAATCCGAATTTCGACGGAAAACTCGTTGGTAAGTTGTGCAAAAATTCAGAAAAAAAACGGAAGTTATTCACGAAAAAACGAGGATTTTGCATTTGGAAATCATGAAAGTCAGTCAGATTCTGAAGTAGAAGATTTGTGAAAAAAGCGCTGAAAAGCACCAAAAATTGCGTGTTTTTTTTTCAAATTTTCTGACCAAGCAGGCAAAAAAAATTACAATTTTATGTTCGAAATTTTCATTGAAAAGTGAAAAACAATAGTGAAATCCGAAGATTTTCAGTCAAAGATCTCATTTTTCCAGATATCGAGAATGAATTCCAGCAACAACTCGGCGTAATGATCCCAAGGCTTTTGGATTCACACGCTCTCGTTCATAAGGAGATTAACGGTCAAAAGATGACGTGCCGGGAGCTTCTCGAGTACTTTAAGGCTTATATGCACATTTTCAGAGGTAAAATTGACAGAAAAACTGATTTTTTAATGTGAAAAATATTGAAAATTAGACTAAAGCCATGTGGCGCATCTGTAAAAATGTTCAAAGGAGAATTAATTCAAAACTTCCAAGAAAGCCAGAAATCCAGAAAAATCACAAAAAAAAACTTAAAAATTGAAAAATTATACTTTAAAAATCGAGATTTTGCAATTTCTTCCAAAATTTGAACTTCGACCAATCATCGATTCGCTCCGCCCACTTTAGCAGAGTTCAACTGCGCTGATTGGTCGGAGAGTTCATATTTTGGAGGGAGATTTGTAAAAATTGAAAAAGTGCGTTTTTTTTTTCGTTTTGGGAATTTTCTTAGTTTCTGAATATTTTGGATTTTTTGAAGTAAAATCCACAGTCATAATTTTTAAATGAACTTTTTTTTTACAGATGAATTTTTCTATTAAAAATCTGGGAAAATTTAGATTTTTGCGGGTTTTTTGGAAAAATATTTGCATTCACAGAAATCTGAAAATTTTAACAGAAAAATGTGTATTTACAATTTTCTAAGCTGAAACACTGAAAATTAATTTCCCTTTAGGCCAAGACCTCCCGGAGCCAAAATCCATGTTAATGGCCACTGCCGAAGCGAACAACTTGGCCGCTGTCGCCTCTGCTCGTGCAGTTTATCAACGAGAAATGGAAGAAGTTTGTGGTGGAGATACCCCATATATGTCTACAAATGAGCTCTTGGAGCATCATGATCGAGTGAAGAATATCGCGATTCGCGAGTTTAGAAATGCTCGGAAGATGGGCGGTGTGGACTTTTCGATGCAATTCTtg/tg
Amino_acid_changeGGSERDTNGILIWSEPFIMKDKNGEEVPNFIYKKRLKNLELPCSPPPPYMPDLKATSACRLPYAKHPFFHINLIFIKLIRNFENLRKNV*RKKKRRKAGVRP*NGACLPWKL*KYVLKVGYRNFFAFLDPKWSKTTKFRNETF*KFFKKKLWSLKVSEKMAHFS*NLRFWQLLGVTAIGN*FLFDYHPLMHVLAFYYVLFR*LRWFFGRWGRKIVSYLCPPHRPKNHLSQRNNI**SAKICIK***SNKN*IPTAARHREVTKI*DFS*KWTVFSKTLRGHTFFFWEIFRTFHYEIW*FWAILGLKKQSLKFRYSMFKFEIVCEI*SNILLFIQNLHRILIFSLQQYLSKIRFFHRLPFSLWTHKEHLIHNRLSRIVLRFSHFPL*FPVFRYQKKLENYKNFTLNYSFILIKFA*KLHKKIMN*YKISFPNEIC*FFSRKNA*NAESLSGRCKNF*TKNPLFFGKPTKMLRIVNF*F*NLYFVVKIQFVSLKFDLSVAKHSN*LH*AKNLEKITQNEVEVPTLLEKLQKKCLEIAETGKSVVRMAQICLKKIIILKKRIFERKSAFFSISRSTICRKTFKKTTYNIFNFSPNTDVWH*KIQPQNPSNRFFSSFVIGHSRMKRNSDFKEGNVYLIDVLR*FLR*TSVENPALQPFPHEGRGKVVSRPWPRGRQVSAAIYLALFSACFLLFFIDFFRFFLLKLINKYFLQMLKQFPRKNHVFSGQAAVKVGNVK*WITGKQNLNFF*NMIHMLLKC*DYLIFITRPLKKF*GFQNSTFCAKISTFHQKS*ILETSKLFQRS*YENQVVSAFKQHMYHVSEKV*VLYSRNPSFYIDHFHRCLPTEYIFFYLEIVLASAKNIYLSVLIRKNGKKL*KTKENRRKTKQDKWPLKLVGPSAMA*KPLFLVPREEKVAVNPAISLILWLKHHIFKISGVRKAARGAPTTSSAHSFVFRGYSMLLDASSRP*SCHKSEFRRKTRW*VVQKFRKKTEVIHEKTRILHLEIMKVSQILK*KICEKSAEKHQKLRVFFSNFLTKQAKKITILCSKFSLKSEKQ**NPKIFSQRSHFSRYRE*IPATTRRNDPKAFGFTRSRS*GD*RSKDDVPGASRVL*GLYAHFQR*N*QKN*FFNVKNIEN*TKAMWRICKNVQRRINSKLPRKPEIQKNHKKKLKN*KIIL*KSRFCNFFQNLNFDQSSIRSAHFSRVQLR*LVGEFIFWREICKN*KSAFFFSFWEFS*FLNILDFLK*NPQS*FLNELFFYR*IFLLKIWENLDFCGFFGKIFAFTEI*KF*QKNVYLQFSKLKH*KLISL*AKTSRSQNPC*WPLPKRTTWPLSPLLVQFINEKWKKFVVEIPHICLQMSSWSIMIE*RISRFASLEMLGRWAVWTFRCNSX/X
IsolationMutagenCRISPR_Cas9
GeneticsInterpolated_map_positionIV-6.7398
RemarkBatch created from Strain genotype dataCurator_confirmedWBPerson1983
Deletion_verification Flanking sequences and deletion extents inferred from design of CRISPR deletion/selection cassette insertion HDR event. QC-PCR assays indicate that the event is imperfect, but it was not sequenced.
MethodDeletion_allele