WormBase Tree Display for Sequence: Y49E10
expand all nodes | collapse all nodes | view schema
Y49E10 | DNA | Y49E10 | 125590 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child (36) | ||||
CDS_child (800) | ||||||
Transcript (44) | ||||||
Pseudogene | Y49E10.5 | 16340 | 15131 | |||
Y49E10.7 | 11425 | 10327 | ||||
Y49E10.8 | 22481 | 23152 | ||||
Y49E10.9 | 27950 | 23686 | ||||
Y49E10.26 | 20487 | 21581 | ||||
Nongenomic | SP11D5 | 80857 | 80695 | |||
yk261g8 | 65059 | 66352 | ||||
yk570b7 | 6835 | 9824 | ||||
[cgc5553]:Y49E10.1 | 3057 | 5053 | ||||
[cgc5225]:pph4.2 | 6834 | 9846 | ||||
[cgc5456]:Y49E10.3 | 8190 | 8828 | ||||
PCR_product (109) | ||||||
Allele (3498) | ||||||
Oligo_set (28) | ||||||
Feature_object (943) | ||||||
Feature_data | Y49E10:Polysome | 1 | 125590 | |||
Y49E10:TranscriptionallyActiveRegion | 1 | 125590 | ||||
Y49E10:ChIPSeqTF | 1 | 125590 | ||||
Y49E10:TRF | 1 | 125590 | ||||
Y49E10:Dust | 1 | 125590 | ||||
Y49E10:inverted | 1 | 125590 | ||||
Homol_data (21) | ||||||
Structure | From | Source | CHROMOSOME_III | |||
Overlap_right | Y111B2A | 125486 | ||||
Overlap_left | Y75B8A | |||||
Clone_left_end | Y49E10 | 1 | ||||
Y111B2 | 36231 | |||||
Clone_right_end | Y75B8 | 34585 | ||||
Y49E10 | 125590 | |||||
DB_info | Database | EMBL | NDB_AC | Z98866 | ||
NDB_SV | Z98866.1 | |||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author | Barlow K | ||||
From_laboratory | HX | |||||
Date_directory | 980401 | |||||
Species | Caenorhabditis elegans | |||||
Strain | WBStrain00000001 | |||||
Visible | Clone | Y49E10 | ||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | 9d01f00ec93876de88ea31156b326efb | ||||
Status | Finished | 01 Apr 1998 00:00:00 | ||||
Submitted | 28 Aug 1997 00:00:00 | |||||
Annotated | 01 Jan 1980 00:00:00 | |||||
Map | Sequence-III | Ends | Left | 6264 | ||
Right | 6318 | |||||
Interpolated_map_position | III | 17.7957 | ||||
Assembly_tags | Clone left end | 1 | 6 | Y49E10 | ||
36231 | 36236 | Y111B2 | ||||
Finished Left | 1 | 6 | Y49E10 | |||
annotation | 9146 | 9135 | [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Comment Region is covered only by a single clone. Region consistent with the digest. | |||
40992 | 40999 | [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Comment Region covered by sonicated library of clone sr36a5. | ||||
48755 | 48820 | [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Comment Region is covered only by one clone but is consistent with the digest. | ||||
56206 | 56238 | [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Comment Single clone region containing reads from a sonication of clone sp26f9. | ||||
Clone right end | 34580 | 34585 | Y75B8 | |||
125585 | 125590 | Y49E10 | ||||
Finished Right | 125585 | 125590 | Y49E10 | |||
Method | Genomic_canonical |