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WormBase Tree Display for Gene: WBGene00004879

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Name Class

WBGene00004879SMapS_parentSequenceC48B6
IdentityVersion1
NameCGC_namesmg-1Person_evidenceWBPerson261
Sequence_nameC48B6.6
Molecular_nameC48B6.6a
C48B6.6a.1
CE30258
C48B6.6b
CE53740
C48B6.6b.1
Other_namemab-1
CELE_C48B6.6Accession_evidenceNDBBX284601
Public_namesmg-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsmg
Reference_alleleWBVar00143847
Allele (147)
Legacy_informatione1228 : adult male has swollen bursa ES3 (adult male) ME1. Adult hermaphrodite has protruding vulva. ES2. NA4 (e1233 e2134spo : similar phenotype).
See also e1228, e1229, e1233, e2134, e2263, ma127, ma129, ma131
[C.elegansII] e1228 : adult male has swollen bursa.ES3 (adult male) ME1. Adult hermaphrodite has protruding vulva. ES2. Recessive suppressor of unc-54(r293), tra-2(e1209), etc. unc-54 nonsense RNAs accumulate.OA>10: e1233, e2134spo (similar phenotypes), ma127, ma131, r861, r913spo, etc. Cloned: 7.8 kb transcript, encodes predicted protein with some kinase similarity in C-term. [Hodgkin et al. 1989; Pulak and Anderson 1993; TR]
Complementation_data[Pulak R] complements n2088
Strain (23)
RNASeq_FPKM (74)
GO_annotation (26)
OrthologWBGene00056175Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00033641Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00125840Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00149586Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00096033Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00141226Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00159327Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00194249Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00194458Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00223091Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g10093Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g1489Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g3327Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g23578Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g3394Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6926Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13433Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g10597Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g4497Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4830Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00009.g720Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-smg-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold555.g3733Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00667.g14210Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_13459Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001850Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09789Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g3025Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10338900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1268Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237921Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00288546Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0263968Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-061013-767Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:30045Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
MGI:1919742Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
Paralog (4)
Structured_descriptionConcise_descriptionsmg-1 encodes a phosphatidylinositol kinase-related protein kinase; SMG-1 functions as a key component of the nonsense-mediated mRNA decay (NMD) pathway that identifies and degrades mRNAs that contain premature stop codons; in addition, and partially in parallel to DAF-2-insulin signaling, SMG-1 regulates adult lifespan and the response to oxidative stress; in vitro, SMG-1 is capable of phosphorylating SMG-2/UPF1, an RNA helicase whose activity is also required for NMD and with which SMG-1 coimmunoprecipitates from crude extracts.Paper_evidenceWBPaper00024418
WBPaper00032237
Curator_confirmedWBPerson1843
Date_last_updated07 Oct 2008 00:00:00
Automated_descriptionPredicted to enable protein serine/threonine kinase activity. Involved in male genitalia development; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and obsolete hermaphrodite genitalia development. Predicted to be located in nucleus. Predicted to be part of TORC1 complex and TORC2 complex. Is an ortholog of human SMG1 (SMG1 nonsense mediated mRNA decay associated PI3K related kinase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC48B6.6a
C48B6.6b
Corresponding_CDS_historyC48B6.6:wp126
C48B6.6b:wp273
Corresponding_transcriptC48B6.6a.1
C48B6.6b.1
Other_sequence (18)
Associated_featureWBsf664370
WBsf664371
WBsf664372
WBsf664373
WBsf984028
WBsf1010005
WBsf219650
WBsf219651
Experimental_infoRNAi_result (20)
Expr_patternExpr1024290
Expr1032418
Expr1146716
Expr2015907
Expr2034140
Construct_productWBCnstr00007260
Regulate_expr_clusterWBPaper00053308:NMD(-)_downregulated_SMD-2_non-binding_ClassIV
WBPaper00053308:NMD(-)_upregulated_SMD-2_non-binding_ClassIII
AntibodyWBAntibody00000757
WBAntibody00002206
Microarray_results (29)
Expression_cluster (93)
Interaction (70)
Map_infoMapIPosition1.48161Error0.009583
Well_ordered
PositivePositive_cloneC48B6Inferred_automaticallyFrom sequence, transcript, pseudogene data
F56F2
Mapping_data2_point328
Multi_point204
1889
1890
2089
5509
Reference (133)
Remark[Pulak R] n2088 may be a deficiency, nDf48
Sequence connection from [O'Connor SL, Anderson RP] based on EMBL:AF149821
MethodGene