WormBase Tree Display for Gene: WBGene00001827

WBGene00001827 SMap: S_parent: Sequence: C46A5
  Identity: Version: 1
    Name: CGC_name: hcf-1
      Sequence_name: C46A5.9
      Molecular_name: C46A5.9
        C46A5.9.1
        CE26914
      Other_name: CELE_C46A5.9 Accession_evidence: NDB BX284604
      Public_name: hcf-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:25 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hcf
    Allele (41)
    Strain: WBStrain00031490
      WBStrain00040638
    RNASeq_FPKM (74)
    GO_annotation (33)
    Contained_in_operon: CEOP4614
    Ortholog: WBGene00059331 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00037233 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00139420 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00106693 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
      WBGene00123260 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00193720 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00223049 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g10743 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7946 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21283 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5588 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7277 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2886 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g14712 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g9117 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g6928 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6612 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00754.g13899 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-hcf-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold23.g105 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold23.g106 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00368.g10252 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19174 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014849 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04540 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_40099400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g10914 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00240938 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00277131 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00283337 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00289181 Trichuris muris From_analysis: WormBase-Compara
      WBGene00289183 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003470 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoInspector
      SGD:S000001201 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoInspector
      FB:FBgn0039904 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-050417-203 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      ZFIN:ZDB-GENE-030912-10 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-2411 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:4839 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:24972 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:105942 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1915183 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      RGD:1307385 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      RGD:1563804 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00009978 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013461 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00021751 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description (2)
  Disease_info: Potential_model: DOID:0111814 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:4839)
  Molecular_info: Corresponding_CDS: C46A5.9
    Corresponding_transcript: C46A5.9.1
    Other_sequence (31)
    Associated_feature: WBsf651947
      WBsf651948
      WBsf230320
  Experimental_info: RNAi_result: WBRNAi00088935 Inferred_automatically: RNAi_primary
      WBRNAi00042584 Inferred_automatically: RNAi_primary
      WBRNAi00081844 Inferred_automatically: RNAi_primary
      WBRNAi00108478 Inferred_automatically: RNAi_primary
      WBRNAi00081815 Inferred_automatically: RNAi_primary
      WBRNAi00062165 Inferred_automatically: RNAi_primary
      WBRNAi00081891 Inferred_automatically: RNAi_primary
      WBRNAi00012019 Inferred_automatically: RNAi_primary
      WBRNAi00081780 Inferred_automatically: RNAi_primary
      WBRNAi00108483 Inferred_automatically: RNAi_primary
    Expr_pattern (11)
    Drives_construct: WBCnstr00005314
      WBCnstr00009024
      WBCnstr00009025
      WBCnstr00036664
    Construct_product: WBCnstr00005314
      WBCnstr00009025
      WBCnstr00010947
      WBCnstr00036664
    Regulate_expr_cluster (17)
    Antibody: WBAntibody00000977
      WBAntibody00001472
    Microarray_results (22)
    Expression_cluster (152)
    Interaction (118)
    WBProcess: WBbiopr:00000001
  Map_info: Map: IV Position: 3.47224 Error: 0.000901
    Positive: Positive_clone: C46A5 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4397
        4935
    Pseudo_map_position
  Reference (32)
  Remark: Sequence connection from [Liu Y, Hengartner MO, Herr W]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene