WormBase Tree Display for Gene: WBGene00012316

WBGene00012316 SMap: S_parent: Sequence: CHROMOSOME_V
  Identity: Version: 2
    Name: CGC_name: ctps-1 Person_evidence: WBPerson261
      Sequence_name: W06H3.3
      Molecular_name: W06H3.3a
        W06H3.3a.1
        CE29830
        W06H3.3b
        CE54462
        W06H3.3b.1
      Other_name: CELE_W06H3.3 Accession_evidence: NDB BX284605
      Public_name: ctps-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 27 Apr 2012 17:06:28 WBPerson2970 Name_change: CGC_name: ctps-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ctps
    Allele (174)
    Strain: WBStrain00002678
    RNASeq_FPKM (74)
    GO_annotation (20)
    Contained_in_operon: CEOP5456
    Ortholog: WBGene00042137 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00056519 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00161206 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00130541 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00086044 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00108517 Pristionchus pacificus From_analysis: OMA
            WormBase-Compara
      WBGene00234205 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g9540 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g7639 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g7154 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g19270 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g26921 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6083 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g10015 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g25990 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g26458 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g7146 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24027 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00286.g8517 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ctps-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold408.g963 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold408.g967 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01019.g17645 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_02851 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_019818 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00888 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g12190 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50376000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g17262 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00255464 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00263759 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00266074 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00266075 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00266077 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00286102 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000135 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      SGD:S000003864 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0266452 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-808 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040801-160 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:2519 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:2520 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1858304 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1933185 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1311060 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1563369 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable CTP synthase activity and identical protein binding activity. Predicted to be involved in CTP biosynthetic process and pyrimidine nucleobase biosynthetic process. Predicted to be located in cytoophidium and cytoplasm. Expressed in germ line. Human ortholog(s) of this gene implicated in biliary tract benign neoplasm; colorectal cancer; and immunodeficiency 24. Is an ortholog of human CTPS1 (CTP synthase 1) and CTPS2 (CTP synthase 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9256 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2520)
      DOID:0111938 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2519)
      DOID:0050625 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2519)
  Molecular_info: Corresponding_CDS: W06H3.3a
      W06H3.3b
    Corresponding_CDS_history: W06H3.3:wp68
    Corresponding_transcript: W06H3.3a.1
      W06H3.3b.1
    Other_sequence (67)
    Associated_feature: WBsf662165
      WBsf662166
      WBsf662167
      WBsf1002532
  Experimental_info: RNAi_result (16)
    Expr_pattern: Chronogram297
      Expr6844
      Expr14957
      Expr1012763
      Expr1035449
      Expr1158458
      Expr2010579
      Expr2028819
    Drives_construct: WBCnstr00003220
    Microarray_results (18)
    Expression_cluster (99)
    Interaction (160)
  Map_info: Map: V Position: 11.1834
    Positive: Positive_clone: W06H3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00059294
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene