Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00060094

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00060094SMapS_parentSequenceCrem_Contig9
IdentityVersion3
Name (5)
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:27WBPerson1847EventCreated
229 Nov 2007 17:00:43WBPerson2970Name_changeCGC_nameCre-cpn-1
303 Jul 2008 11:45:30WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE29711
Other_namecr01.sctg16.wum.263
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcpn
RNASeq_FPKMWBls:000000466.7017From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
76.8455From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
86.9893From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:000002721.7237From_analysisRNASeq.remanei.WBls:0000027.control_mean
22.1293From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
22.5675From_analysisRNASeq.remanei.WBls:0000027.control_median
23.0057From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
35.0329From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
6.72676From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003824.7361From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
50.0232From_analysisRNASeq.remanei.WBls:0000038.control_mean
56.5029From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
68.8306From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:0000041250.035From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
284.995From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
310.564From_analysisRNASeq.remanei.WBls:0000041.control_mean
314.434From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
319.309From_analysisRNASeq.remanei.WBls:0000041.control_median
324.183From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
338.93From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
350.806From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
WBls:0000063 (12)
WBls:0000101126.75From_analysisRNASeq.remanei.total_over_all_stages.control_mean
93.2938From_analysisRNASeq.remanei.total_over_all_stages.control_median
OrthologWBGene00000777Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00000778Caenorhabditis elegansFrom_analysisTreeFam
WBGene00033441Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00101020Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00159661Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00178953Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00162625Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00148319Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00122476Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00131242Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00231502Brugia malayiFrom_analysisWormBase-Compara
WBGene00237446Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g9665Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9871Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12426Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1735Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g2280Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g8268Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7689Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10751Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g2441Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g24325Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00476.g11282Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-cpn-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20464Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_07640.g37993Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07068Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_002623Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05046Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05924Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g18306Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10313300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1634Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00263351Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00293742Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00056029Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00064707Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00062365Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00051281Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00052222Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00056204Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00056433Caenorhabditis remaneiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Calponin family repeat; Calponin repeat; Smooth muscle protein/calponin; CH domain superfamily; Calponin homology domain; and Calponin homology (CH) domain. Is an ortholog of C. elegans cpn-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE29711
Corresponding_transcriptCRE29711.1
Other_sequence (89)
Experimental_infoExpr_patternExpr1100767
Microarray_resultsGPL14146_CRE29711_205-264_0.912_14_B
GPL14146_CRE29711_248-307_0.923_11_C
GPL14146_CRE29711_559-618_0.978_1_A
MethodGene