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WormBase Tree Display for Gene: WBGene00062365

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Name Class

WBGene00062365SMapS_parentSequenceCrem_Contig36
IdentityVersion3
NameCGC_nameCre-cpn-3From_analysisInferred_from_orthology
Sequence_nameCRE24012
Molecular_nameCRE24012
CRE24012.1
RP13424
Other_namecr01.sctg31.wum.73
Public_nameCre-cpn-3
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:27WBPerson1847EventCreated
229 Nov 2007 17:00:40WBPerson2970Name_changeCGC_nameCre-cpn-3
303 Jul 2008 11:45:44WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE24012
Other_namecr01.sctg31.wum.73
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcpn
RNASeq_FPKMWBls:000000454.5953From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
59.1288From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
63.6624From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:0000027441.131From_analysisRNASeq.remanei.WBls:0000027.control_mean
541.298From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
552.892From_analysisRNASeq.remanei.WBls:0000027.control_median
564.486From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
585.078From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
73.6635From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:00000381164.01From_analysisRNASeq.remanei.WBls:0000038.control_mean
1447.81From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
1857.93From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
186.3From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:00000411037.53From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
1080From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
1153.86From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
469.848From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
504.166From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
647.149From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
815.425From_analysisRNASeq.remanei.WBls:0000041.control_mean
842.339From_analysisRNASeq.remanei.WBls:0000041.control_median
WBls:0000063 (12)
WBls:0000101839.744From_analysisRNASeq.remanei.total_over_all_stages.control_median
926.399From_analysisRNASeq.remanei.total_over_all_stages.control_mean
Ortholog (33)
ParalogWBGene00056029Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00060094Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00064707Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00051281Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00052222Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00056204Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00056433Caenorhabditis remaneiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Smooth muscle protein/calponin; CH domain superfamily; Calponin homology domain; and Calponin homology (CH) domain. Is an ortholog of C. elegans cpn-3.Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE24012
Corresponding_transcriptCRE24012.1
Other_sequenceACC00141_1
Tcol_isotig00385
TLC00179_1
FD515465.1
CB038173.1
HC03359
CB038216.1
FC815166.1
TX00566
GW411311.1
BUC00345_1
AS03850
NB08032
BU087862.1
JO469670.1
MH02735
CN478142.1
FG619374.1
AS02763
DAC01279_1
CN478141.1
EX559719.1
GRC01115_1
MCC00910_1
MCC05325_1
RS06647
TMC01348_1
ASC17401_1
MH00798
Hbac_isotig04857
MJ00729
HBC02696_1
GW407345.1
BU586705.1
MCC01144_1
ES570270.1
TCC00750_1
FC817857.1
JI178926.1
MJC00111_1
FC809819.1
Tcol_isotig00381
FC812231.1
MI00500
DA05285
MJ00809
FC817434.1
MIC06907_1
BMC05180_1
OVC00409_1
RSC00229_1
FK803332.1
MC01119
BE239220.1
CB038041.1
ES743261.1
JI172990.1
ASC00691_1
GO249886.1
ES739697.1
CN478114.1
Tcol_isotig00384
GR12732
FG971673.1
FD517778.1
AS09300
FJ931461.1
FD516467.1
PPC00856_1
XIC05314_1
FG619389.1
JI236934.1
FG585985.1
MCC05959_1
MP00642
AS15424
SR00876
HG03250
GO250260.1
RSC00130_1
MJC00111_2
DV019502.1
CB037343.1
Tcol_isotig22377
GW412101.1
AAC00321_1
CR02318
TCC00247_1
PSC00172
Tcol_isotig20758
MHC00448_1
FD515028.1
BU586711.1
CRC00652_1
EX014461.1
XIC00233_1
SRC00650_1
TX00880
AS04178
JK315759.1
MPC01654_1
EX563805.1
PTC03846_1
TDC01021_1
Oden_isotig11777
CN478150.1
EX560098.1
MJ01523
ES409306.1
FD514118.1
HCC01665_1
RSC03625_1
FC817853.1
GE625612.1
NAC01372_1
MI02270
Tcir_isotig08035
PP00527
CB036306.1
FD516284.1
CN478185.1
FJ931462.1
EX554813.1
RSC00556_1
MI02152
MJ00518
Tcol_isotig00383
GO250186.1
XIC00159_1
BU587098.1
RSC00199_1
BU086637.1
ALC00820_1
AS00169
MH02704
EX011512.1
OOC01904_1
CBC00882_1
MIC00355_2
MC02288
GW409713.1
ES409560.1
MC00562
ASC00906_1
EX562715.1
XI01044
Tcol_isotig00382
CSC01150_1
ES569796.1
HG06584
MHC02098_1
JI480045.1
CB036659.1
RSC00315_1
AI055751.1
RSC00021_1
AS01789
XI00980
CN478158.1
MJC04571_1
EX535178.1
MI01123
GR12283
PT00521
PPC02126_1
RS07911
CB036849.1
Name_isotig04233
OOC00253_1
XI04709
DN190801.1
GW412945.1
FK804306.1
FC811853.1
ES412358.1
FG580983.1
MIC00355_1
MH02836
CJC01061_1
BI783985.1
BM00689
TM01659
GRC00405_1
GO249876.1
TCC00297_1
Acan_isotig14258
GRC01746_1
GO253126.1
ES413140.1
BM052068.1
Tcol_isotig00380
EX563523.1
MI03776
MHC00282_1
BXC01831_1
TX00838
AI130455.1
EX555012.1
RS06386
ES880605.1
NBC00418_1
BG734295.1
CB036688.1
HGC06085_1
BU586796.1
TSC09167_1
Experimental_infoExpr_patternExpr1093265
Microarray_resultsGPL14146_CRE24012_260-319_0.944_1_A
GPL14146_CRE24012_293-352_0.937_2_B
GPL14146_CRE24012_64-123_0.917_6_C
MethodGene