WormBase Tree Display for Gene: WBGene00029081

WBGene00029081 SMap: S_parent: Sequence: cb25.fpc0201
  Identity: Version: 1
    Name: Sequence_name: CBG06887
      Molecular_name: CBG06887
        CBG06887.1
        CBP07500
      Other_name: CBG_06887 Accession_evidence: NDB HE601347
      Public_name: CBG06887
    DB_info: Database: NDB locus_tag CBG_06887
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:58 WBPerson1971 Event: Imported: Initial conversion from brigace
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000002 11.4542 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        6.27373 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        7.59828 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        8.44207 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        8.00161 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        8.40494 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        8.43279 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 13.8629 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        15.1402 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        16.4174 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        14.2244 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        14.8349 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 13.1562 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        17.2708 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        21.3855 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        14.0637 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        14.7101 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        15.2379 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        15.7107 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
      WBls:0000024 11.0435 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        12.1474 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        12.7268 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        12.7416 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        13.3061 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        14.4695 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        5.94109 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        6.65461 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
        8.04158 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        10.2782 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        5.60009 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
        9.76957 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
      WBls:0000027 0.97541 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        12.319 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        3.80833 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        5.70091 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        20.4643 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        8.06367 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        9.39176 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 11.007 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 10.0465 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        12.1252 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        15.0168 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        3.20473 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        7.96777 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        9.57862 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
      WBls:0000041 10.702 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        10.7903 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        11.1582 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        11.5262 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        12.0975 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        15.3714 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        10.2947 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        11.9875 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        13.2405 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 13.0007 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        7.0093 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        7.34155 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        7.89862 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        8.65362 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        8.78076 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        6.65046 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        7.62008 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        8.42571 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 10.3391 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        11.0435 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        10.9769 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        11.4902 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    Ortholog: WBGene00015128 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00055206 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00158063 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00126664 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00107415 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g5074 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6471 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21857 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g10353 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15379 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2952 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1194 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g15738 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g23521 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6789 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00419.g10592 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-B0303.7 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g8113 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00078.g3538 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_22293 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009310 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04884 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g12917 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30286000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00222008 Brugia malayi From_analysis: WormBase-Compara
      chrIII_pilon.g8452 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246338 Onchocerca volvulus From_analysis: WormBase-Compara
    Paralog: WBGene00034840 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040890 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040942 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: SH3 domain and SH3-like domain superfamily. Is an ortholog of C. elegans B0303.7. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG06887
    Corresponding_CDS_history: CBG06887:bp194
    Corresponding_transcript: CBG06887.1
    Other_sequence: EX542306.1
      Name_isotig03165
      CJC16153_1
      Hbac_isotig04522
      Oden_isotig16351
      EX545727.1
      HBC24734_1
      TDC01786_1
      Dviv_isotig22863
      EY464245.1
      EY465727.1
      EX548790.1
      EX548368.1
      EX539577.1
      Dviv_isotig15892
      ACC25065_1
      ACC23736_1
      ACC11459_1
      PT03431
      Acan_isotig10357
      ACC06904_1
      Oden_isotig16352
      EY473142.1
      EY470814.1
      CB036853.1
      FK801348.1
      ES740325.1
      EX544714.1
      Hbac_isotig03134
  Experimental_info: Expr_pattern: Expr1064635
    Microarray_results: GPL8303_CB6_WBGene00029081_A
      GPL8303_CB6_WBGene00029081_B
      GPL14143_CBG06887_766-825_0.901_12_B
      GPL14143_CBG06887_1019-1078_0.934_1_A
      GPL14143_CBG06887_1391-1450_0.912_6_C
  Method: Gene