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WormBase Tree Display for Gene: WBGene00040942

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Name Class

WBGene00040942SMapS_parentSequencecb25.fpc4334a
IdentityVersion4
NameCGC_nameCbr-sorb-1From_analysisInferred_from_orthology
Sequence_nameCBG22368
Molecular_nameCBG22368a
CBG22368a.1
CBP44013
CBG22368b
CBP47278
CBG22368b.1
Other_nameCbr-tag-208From_analysisInferred_from_orthology
CBG_22368Accession_evidenceNDBHE600912
Public_nameCbr-sorb-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-tag-208
324 Jul 2008 11:56:37WBPerson1847EventAcquires_mergeWBGene00040941
422 Nov 2011 16:45:56WBPerson2970Name_changeCGC_nameCbr-sorb-1
Other_nameCbr-tag-208
Acquires_mergeWBGene00040941
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsorb
RNASeq_FPKMWBls:000000211.6053From_analysisRNASeq.briggsae.WBls:0000002.control_mean
12.477From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
12.6071From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
9.73182From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
11.1044From_analysisRNASeq.briggsae.WBls:0000002.control_median
4.8363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
9.91306From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000031.41896From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
2.78507From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
4.15119From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
3.12257From_analysisRNASeq.briggsae.WBls:0000003.control_mean
3.79757From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000414.8324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
15.7454From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
16.6584From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
16.6706From_analysisRNASeq.briggsae.WBls:0000004.control_mean
16.8014From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
17.4767From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
17.584From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002713.2974From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.34974From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
29.9147From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
8.62778From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
17.55From_analysisRNASeq.briggsae.WBls:0000027.control_mean
19.2712From_analysisRNASeq.briggsae.WBls:0000027.control_median
30.3078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003516.4699From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.3118From_analysisRNASeq.briggsae.WBls:0000038.control_mean
12.346From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
13.0468From_analysisRNASeq.briggsae.WBls:0000038.control_median
13.7475From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
19.8561From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.29753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000412.82928From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.98632From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.44958From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.91284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
4.40497From_analysisRNASeq.briggsae.WBls:0000041.control_mean
7.89146From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.35685From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.68063From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.80086From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
9.66304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000631.88097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.79577From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.76741From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.10721From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
4.12478From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
5.9283From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
4.09815From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.11599From_analysisRNASeq.briggsae.WBls:0000063.control_median
5.75186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010110.2493From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
8.62778From_analysisRNASeq.briggsae.total_over_all_stages.control_median
10.796From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
9.14541From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (35)
ParalogWBGene00029081Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034840Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040890Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: SH3-like domain superfamily; SH3 domain; SoHo domain; and Variant SH3 domain. Is an ortholog of C. elegans sorb-1. In C. elegans, sorb-1 is involved in maintenance of mitochondrion location and sarcomere organization.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG22368a
CBG22368b
Corresponding_CDS_historyCBG22368:bp194
CBG22368:bp255
Corresponding_transcriptCBG22368a.1
CBG22368b.1
Other_sequence (30)
Experimental_infoExpr_patternExpr1064690
Microarray_resultsGPL8303_CB6_WBGene00040942_A
GPL8303_CB6_WBGene00040942_B
GPL14143_CBG22368_264-323_0.810_80_C
GPL14143_CBG22368_737-796_0.790_118_B
GPL14143_CBG22368_1016-1075_0.810_82_A
MethodGene