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WormBase Tree Display for Gene: WBGene00029554

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Name Class

WBGene00029554SMapS_parentSequencecb25.fpc0829
IdentityVersion3
NameCGC_nameCbr-let-4From_analysisInferred_from_orthology
Sequence_nameCBG07555
Molecular_nameCBG07555
CBG07555.1
CBP44402
Other_nameCbr-sym-5From_analysisInferred_from_orthology
CBG_07555Accession_evidenceNDBHE601041
Public_nameCbr-let-4
DB_infoDatabaseNDBlocus_tagCBG_07555
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-sym-5
323 Apr 2013 14:26:52WBPerson2970Name_changeCGC_nameCbr-let-4
Other_nameCbr-sym-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlet
RNASeq_FPKMWBls:000000212.4348From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
5.35424From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
7.4916From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
8.42688From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.85715From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
6.42292From_analysisRNASeq.briggsae.WBls:0000002.control_median
7.53445From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000310.7204From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
15.2027From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
6.23805From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
6.40217From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
9.28097From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000436.1537From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
38.2785From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
40.4034From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
36.6073From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
38.4394From_analysisRNASeq.briggsae.WBls:0000004.control_mean
38.5156From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
40.5171From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.368905From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
17.3712From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.81745From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
6.51919From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.19053From_analysisRNASeq.briggsae.WBls:0000027.control_median
2.5636From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
5.53029From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003541.9178From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.1602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
17.9856From_analysisRNASeq.briggsae.WBls:0000038.control_mean
4.49654From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
49.2508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
7.03502From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
9.09761From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:00000410.381876From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.579414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.648045From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.716677From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.939349From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.07943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.772909From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.829141From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
0.878965From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
0.910917From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630.130226From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.27123From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.428825From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.797097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.191137From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.252048From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.268033From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010111.8034From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.45341From_analysisRNASeq.briggsae.total_over_all_stages.control_median
12.4664From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
3.53007From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00132937
00132938
00132939
00132940
Ortholog (24)
ParalogWBGene00025696Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029553Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033540Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035250Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035613Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037524Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041068Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable transmembrane signaling receptor activity. Predicted to be involved in immune response and toll-like receptor signaling pathway. Predicted to be located in membrane. Is an ortholog of C. elegans let-4. In C. elegans, let-4 is involved in several processes, including epithelial cell development; nematode larval development; and positive regulation of membrane permeability.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07555
Corresponding_CDS_historyCBG07555:bp194
CBG07555:bp255
Corresponding_transcriptCBG07555.1
Other_sequence (11)
Experimental_infoExpr_patternExpr1056433
Microarray_resultsGPL8303_CB6_WBGene00029554_A
GPL8303_CB6_WBGene00029554_C
GPL8303_CB6_WBGene00029554_D
GPL8303_CB6_WBGene00029554_E
GPL14143_CBG07555_1045-1104_0.790_20_C
GPL14143_CBG07555_1273-1332_0.795_15_A
GPL14143_CBG07555_1323-1382_0.790_21_B
MethodGene