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WormBase Tree Display for Gene: WBGene00035250

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Name Class

WBGene00035250SMapS_parentSequencecb25.fpc3857b
IdentityVersion2
NameCGC_nameCbr-egg-6From_analysisInferred_from_orthology
Sequence_nameCBG14867
Molecular_nameCBG14867
CBG14867.1
CBP09760
Other_nameCBG_14867Accession_evidenceNDBHE600904
Public_nameCbr-egg-6
DB_infoDatabaseNDBlocus_tagCBG_14867
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
212 Aug 2011 13:46:55WBPerson2970Name_changeCGC_nameCbr-egg-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classegg
AlleleWBVar00121825
WBVar00121821
WBVar00121822
WBVar00121823
WBVar00121824
RNASeq_FPKMWBls:0000002123.651From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
135.92From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
33.2053From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
97.5921From_analysisRNASeq.briggsae.WBls:0000002.control_mean
123.788From_analysisRNASeq.briggsae.WBls:0000002.control_mean
129.786From_analysisRNASeq.briggsae.WBls:0000002.control_median
202.377From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003167.567From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
170.831From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
174.095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
186.648From_analysisRNASeq.briggsae.WBls:0000003.control_mean
218.282From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000450.9908From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
51.3323From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
51.6738From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
51.393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
55.5166From_analysisRNASeq.briggsae.WBls:0000004.control_mean
57.2881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
66.2371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002715.4411From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.55921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
4.21734From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
7.07255From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.92212From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
4.06973From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.28494From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003549.0675From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.7189From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
15.9333From_analysisRNASeq.briggsae.WBls:0000038.control_median
16.7976From_analysisRNASeq.briggsae.WBls:0000038.control_mean
17.1477From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
28.8468From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.47708From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041194.597From_analysisRNASeq.briggsae.WBls:0000041.control_mean
240.231From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
245.855From_analysisRNASeq.briggsae.WBls:0000041.control_median
251.48From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
256.019From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
30.6591From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
142.69From_analysisRNASeq.briggsae.WBls:0000041.control_mean
144.868From_analysisRNASeq.briggsae.WBls:0000041.control_median
28.2459From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
49.5057From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:0000063117.01From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
78.0878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
78.5263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
79.4601From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
85.4841From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
87.7137From_analysisRNASeq.briggsae.WBls:0000063.control_mean
111.939From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
82.4721From_analysisRNASeq.briggsae.WBls:0000063.control_median
91.7512From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010149.0675From_analysisRNASeq.briggsae.total_over_all_stages.control_median
73.7775From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
51.1919From_analysisRNASeq.briggsae.total_over_all_stages.control_median
77.072From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (23)
ParalogWBGene00025696Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029553Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029554Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033540Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035613Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037524Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041068Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Leucine-rich repeat; Leucine-rich repeat domain superfamily; Leucine rich repeat; and Leucine-rich repeat, typical subtype. Is an ortholog of C. elegans egg-6.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG14867
Corresponding_CDS_historyCBG14867:bp194
CBG14867:bp255
Corresponding_transcriptCBG14867.1
Other_sequence (40)
Experimental_infoExpr_patternExpr1070212
Microarray_resultsGPL8303_CB6_WBGene00035250_A
GPL8303_CB6_WBGene00035250_B
GPL14143_CBG14867_2260-2319_0.793_111_B
GPL14143_CBG14867_2385-2444_0.837_70_A
GPL14143_CBG14867_2423-2482_0.914_11_C
MethodGene