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WormBase Tree Display for Gene: WBGene00040890

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Name Class

WBGene00040890SMapS_parentSequencecb25.fpc4321
IdentityVersion2
NameCGC_nameCbr-unc-57From_analysisInferred_from_orthology
Sequence_nameCBG22292
Molecular_nameCBG22292a
CBG22292a.1
CBP33757
CBG22292b
CBP40402
CBG22292b.1
Other_nameCBG_22292Accession_evidenceNDBHE601428
Public_nameCbr-unc-57
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-unc-57
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:000000267.8566From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
71.9136From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
79.2257From_analysisRNASeq.briggsae.WBls:0000002.control_mean
97.9068From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
78.9073From_analysisRNASeq.briggsae.WBls:0000002.control_median
80.8945From_analysisRNASeq.briggsae.WBls:0000002.control_mean
85.901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000355.1033From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
59.4292From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
63.7551From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
59.5672From_analysisRNASeq.briggsae.WBls:0000003.control_mean
59.8431From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000436.0683From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
39.6742From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
43.2801From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
43.0554From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
44.696From_analysisRNASeq.briggsae.WBls:0000004.control_mean
50.0371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
51.0393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024105.268From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
35.9507From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
40.1744From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
52.0313From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
66.9442From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
71.435From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
77.3857From_analysisRNASeq.briggsae.WBls:0000024.control_median
81.7459From_analysisRNASeq.briggsae.WBls:0000024.control_mean
83.3365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
31.6166From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
45.2092From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
49.0284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
WBls:000002711.7103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
31.5851From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
34.2842From_analysisRNASeq.briggsae.WBls:0000027.control_mean
59.5571From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
112.852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
45.5711From_analysisRNASeq.briggsae.WBls:0000027.control_median
53.9261From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003567.5107From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038105.224From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
20.8508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
22.1443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
43.3963From_analysisRNASeq.briggsae.WBls:0000038.control_median
53.2168From_analysisRNASeq.briggsae.WBls:0000038.control_mean
64.6482From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004172.197From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
91.4489From_analysisRNASeq.briggsae.WBls:0000041.control_mean
97.0098From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
97.0283From_analysisRNASeq.briggsae.WBls:0000041.control_median
97.0467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
99.542From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
63.7097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
75.8518From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
84.2262From_analysisRNASeq.briggsae.WBls:0000041.control_mean
86.4308From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006328.4488From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
29.8599From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
33.8614From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
39.6808From_analysisRNASeq.briggsae.WBls:0000063.control_mean
39.7348From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
66.499From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
36.7981From_analysisRNASeq.briggsae.WBls:0000063.control_median
42.4544From_analysisRNASeq.briggsae.WBls:0000063.control_mean
56.3227From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010158.9758From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
64.6482From_analysisRNASeq.briggsae.total_over_all_stages.control_median
60.7608From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
63.7324From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00144251
OrthologWBGene00006791Caenorhabditis elegansFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00060431Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00163512Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00117351Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00125860Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g9341Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7630Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2682Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14792Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6658Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g499Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2984Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g22075Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g17236Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g21108Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00351.g9604Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_I.g750Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8509Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00461.g11673Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_14743Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001237Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05701Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06261Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08154Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g16569Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10308110Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00225806Brugia malayiFrom_analysisWormBase-Compara
chrI_pilon.g754Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237374Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00259642Strongyloides rattiFrom_analysisWormBase-Compara
ParalogWBGene00029081Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034840Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040942Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be located in cytoplasm. Is an ortholog of C. elegans unc-57. In C. elegans, unc-57 is involved in clathrin-dependent endocytosis and necroptotic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG22292a
CBG22292b
Corresponding_CDS_historyCBG22292:bp194
Corresponding_transcriptCBG22292a.1
CBG22292b.1
Other_sequenceCBC00895_1
CR03029
ASC01350_1
HG03451
Name_isotig05128
BE202311.1
HGC09032_1
CV200640.1
PVC01369_1
JI478196.1
GO252759.1
HS00881
ES568861.1
HS01022
HGC07685_1
XIC01805_1
SSC02734_1
Dviv_isotig33658
TM03699
HG06814
FC555729.1
EY468194.1
TSC10541_1
AS02640
HGC06931_1
HSC01198_1
Oden_isotig17854
Hbac_isotig00816
OVC06445_1
ACC02360_1
JI175156.1
CSC02089_1
MIC05467_1
AS04662
ES568850.1
TMC02148_1
MC02808
HSC01342_1
CRC00315_1
CR03384
HS01288
MCC04218_1
FD516700.1
Acan_isotig08067
FC555660.1
Hbac_isotig00817
HG01072
Oden_isotig28039
MCC02476_1
XI01000
MC00374
CRC02982_1
SS00808
JI172746.1
HSC00854_1
Experimental_infoExpr_patternExpr1060921
Microarray_resultsGPL8303_CB6_WBGene00040890_A
GPL8303_CB6_WBGene00040890_B
GPL8303_CB6_WBGene00040890_C
GPL14143_CBG22292_704-763_0.785_69_C
GPL14143_CBG22292_976-1035_0.952_2_B
GPL14143_CBG22292_993-1052_0.948_3_A
MethodGene