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WormBase Tree Display for Gene: WBGene00041068

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Name Class

WBGene00041068SMapS_parentSequencecb25.fpc4347a
IdentityVersion3
NameCGC_nameCbr-sma-10From_analysisInferred_from_orthology
Sequence_nameCBG22529
Molecular_nameCBG22529
CBG22529.1
CBP43979
Other_nameCBG_22529Accession_evidenceNDBHE600977
Public_nameCbr-sma-10
DB_infoDatabaseNDBlocus_tagCBG_22529
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:11WBPerson1971EventImportedInitial conversion from brigace
224 Jul 2008 11:56:37WBPerson1847EventAcquires_mergeWBGene00041067
320 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-sma-10
Acquires_mergeWBGene00041067
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsma
AlleleWBVar00034177
WBVar00034172
RNASeq_FPKMWBls:00000028.786From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
8.8268From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
9.19565From_analysisRNASeq.briggsae.WBls:0000002.control_mean
9.97415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
5.57608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
8.29076From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.8064From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.233864From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.309683From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.385502From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.329201From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.368236From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000041.6164From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.84007From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
2.06373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1.66101From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
1.73606From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.79779From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.91176From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.0042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.13643From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.19156From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.7774From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.42411From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.74721From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.65666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000359.31273From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.8917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
1.32358From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
13.9078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.07307From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
8.29904From_analysisRNASeq.briggsae.WBls:0000038.control_mean
8.98238From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:00000414.42877From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
4.60038From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
4.96102From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.08869From_analysisRNASeq.briggsae.WBls:0000041.control_mean
5.32166From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
6.00396From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.26029From_analysisRNASeq.briggsae.WBls:0000041.control_mean
5.41435From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.50704From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
5.69995From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006310.0832From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
11.0319From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
11.6991From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
8.55001From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.93586From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
10.0095From_analysisRNASeq.briggsae.WBls:0000063.control_median
8.25438From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
8.50074From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001017.09777From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
8.786From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.85195From_analysisRNASeq.briggsae.total_over_all_stages.control_median
6.4528From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (28)
ParalogWBGene00025696Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029553Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029554Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033540Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035250Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035613Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037524Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Immunoglobulin I-set domain; Leucine-rich repeat, typical subtype; Leucine-rich repeat; Immunoglobulin I-set; Immunoglobulin-like fold; Immunoglobulin subtype 2; Leucine-rich repeat domain superfamily; Immunoglobulin domain; Immunoglobulin-like domain superfamily; Immunoglobulin subtype; and Leucine rich repeat. Is an ortholog of C. elegans sma-10. In C. elegans, sma-10 is involved in several processes, including positive regulation of transforming growth factor beta receptor signaling pathway; regulation of mesodermal cell fate specification; and transforming growth factor beta receptor signaling pathway.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG22529
Corresponding_CDS_historyCBG22529:bp194
CBG22529:bp255
Corresponding_transcriptCBG22529.1
Other_sequence (12)
Experimental_infoExpr_patternExpr1065425
Microarray_resultsGPL8303_CB6_WBGene00041067_A
GPL8303_CB6_WBGene00041067_B
GPL14143_CBG22529_1897-1956_0.904_14_C
GPL14143_CBG22529_2200-2259_0.916_5_A
GPL14143_CBG22529_2347-2406_0.953_1_B
MethodGene