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WormBase Tree Display for Gene: WBGene00123260

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Name Class

WBGene00123260SMapS_parentSequenceCjap.Contig17742
IdentityVersion2
NameCGC_nameCjp-hcf-1From_analysisInferred_from_orthology
Sequence_nameCJA04056
Molecular_nameCJA04056
CJA04056.1
JA68545
Public_nameCjp-hcf-1
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:20WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCjp-hcf-1
229 Jul 2011 11:13:37WBPerson4055EventImportedAugustus import
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhcf
RNASeq_FPKMWBls:000000467.8739From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002726.3858From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003818.6706From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
20.4974From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
22.3242From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004112.384From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
12.4077From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
14.5395From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
16.9294From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
43.5887From_analysisRNASeq.japonica.WBls:0000041.control_median
47.0145From_analysisRNASeq.japonica.WBls:0000041.control_mean
70.2481From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
80.6152From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
83.4746From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
85.5172From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
WBls:000010122.3242From_analysisRNASeq.japonica.total_over_all_stages.control_median
39.3362From_analysisRNASeq.japonica.total_over_all_stages.control_mean
OrthologWBGene00001827Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00037233Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00059331Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00106693Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00139420Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00193720Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00223049Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g10743Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7946Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g21283Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g5588Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g7277Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g2886Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14712Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9117Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g6928Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6612Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00754.g13899Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-hcf-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold23.g105Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold23.g106Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00368.g10252Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_19174Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_014849Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04540Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_40099400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g10914Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00240938Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00277131Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00283337Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00289181Trichuris murisFrom_analysisWormBase-Compara
WBGene00289183Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00126482Caenorhabditis japonicaFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Fibronectin type III superfamily; Kelch-type beta propeller; Host cell factor; Fibronectin type III; Immunoglobulin-like fold; Galactose oxidase, central domain; and Kelch motif. Is an ortholog of C. elegans hcf-1. In C. elegans, hcf-1 is involved in several processes, including dauer exit; determination of adult lifespan; and regulation of DNA-templated transcription.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA04056
Corresponding_CDS_historyCJA04056:jp241
Corresponding_transcriptCJA04056.1
Other_sequenceCBC04896_1
EX547747.1
EY472262.1
Oden_isotig21290
EY459212.1
Acan_isotig09124
ACC14705_1
EX540957.1
Tcir_isotig10583
EY465760.1
CJC08311_1
EY462261.1
FC555680.1
EY459300.1
Acan_isotig08888
EY472639.1
EX538098.1
EY471511.1
JI165638.1
EY469247.1
Hbac_isotig04828
Oden_isotig17348
EY472810.1
JI475416.1
FC555714.1
ACC04699_1
Experimental_infoExpr_patternExpr1077546
Microarray_resultsGPL14145_CJA04056_1801-1860_0.619_286_B
GPL14145_CJA04056_1938-1997_0.908_12_A
GPL14145_CJA04056_1971-2030_0.944_5_C
MethodGene