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WormBase Tree Display for Gene: WBGene00129780

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Name Class

WBGene00129780SMapS_parentSequenceCjap.Contig18042
IdentityVersion2
NameCGC_nameCjp-nhr-28From_analysisInferred_from_orthology
Sequence_nameCJA10576
Molecular_nameCJA10576a
CJA10576a.1
JA46504
CJA10576b
JA56813
CJA10576b.1
Public_nameCjp-nhr-28
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:22WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCjp-nhr-28
229 Jul 2011 11:13:37WBPerson4055EventImportedAugustus import
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:000000435.6966From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002741.1503From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003814.9316From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
18.0375From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
21.1434From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.1701From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
10.4978From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
10.9719From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
6.99802From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
8.33037From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
8.43212From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
8.48976From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
8.74798From_analysisRNASeq.japonica.WBls:0000041.control_median
9.00619From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
9.11203From_analysisRNASeq.japonica.WBls:0000041.control_mean
WBls:000010110.1701From_analysisRNASeq.japonica.total_over_all_stages.control_median
14.2937From_analysisRNASeq.japonica.total_over_all_stages.control_mean
GO_annotation00195092
00195093
00195094
00195095
OrthologWBGene00003624Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00036331Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00063248Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00143344Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00223242Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3880Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12381Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g19726Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g16169Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g4677Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g24575Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13758Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21016Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13842Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g9810Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00546.g12088Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nhr-28Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13351Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00001.g38Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_02373Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023172Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01183Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08853Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_X0042000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20874Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242085Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00288616Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00120567Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00121360Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00123618Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00124216Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00124337Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00126594Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00129322Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00136333Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00184490Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00133329Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00136726Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00210017Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00119327Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00119542Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00119766Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00119838Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00119968Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00120313Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00120496Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00121931Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00122418Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00122685Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00122776Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00123193Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00123519Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00123728Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00123976Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00124455Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00124484Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00124734Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00125220Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00125311Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00126310Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00126433Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00127401Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00127569Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00127893Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00128037Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00128550Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00128653Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00128868Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00128901Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00129305Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00129339Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00130338Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00130395Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00130502Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00130736Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00131487Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00131954Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00132662Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00132850Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00133804Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00133815Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00133848Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00133880Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00134540Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00134864Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00135326Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00135502Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00135540Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00135839Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00135988Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00136086Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00136603Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00136697Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00136773Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00137481Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00137511Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00137651Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00137748Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00137842Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00138394Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00138649Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00138671Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00138693Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00175273Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00177303Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00179670Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00183639Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00184480Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00207132Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00207388Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00208698Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00209316Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00209318Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00209494Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00212067Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00212224Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00212308Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00213152Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00213623Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00214267Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00214589Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00215732Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00216057Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00216710Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00216790Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00217088Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00217117Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00217407Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00217596Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00218378Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00218448Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00218786Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00219027Caenorhabditis japonicaFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-28.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA10576a
CJA10576b
Corresponding_transcriptCJA10576a.1
CJA10576b.1
Other_sequenceFK801587.1
HG02535
CR05291
HBC20016_1
EX011084.1
CRC08495_1
CR10545
EX545837.1
MP01954
CRC01775_1
Hbac_isotig04649
HGC02701_1
Experimental_infoExpr_patternExpr1083634
Microarray_resultsGPL14145_CJA10576_281-340_0.857_39_B
GPL14145_CJA10576_30-89_0.884_26_C
GPL14145_CJA10576_799-858_0.949_3_A
MethodGene