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WormBase Tree Display for Gene: WBGene00145079

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Name Class

WBGene00145079SMapS_parentSequenceCbre_Contig60
IdentityVersion2
NameCGC_nameCbn-unc-52From_analysisInferred_from_orthology
Sequence_nameCBN06354
Molecular_nameCBN06354
CBN06354.1
CN37966
Other_nameCBN06354
Public_nameCbn-unc-52
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-unc-52
210 Jun 2014 12:12:12WBPerson1983EventAcquires_mergeWBGene00153818
Acquires_mergeWBGene00153818
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:000000215.2564From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
15.6459From_analysisRNASeq.brenneri.WBls:0000002.control_mean
16.5187From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
16.8323From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
17.9447From_analysisRNASeq.brenneri.WBls:0000002.control_median
19.0571From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
19.4026From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
19.4658From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
20.8086From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
29.1178From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
4.51172From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
9.02344From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
31.823From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
32.9749From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
34.1042From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
42.2612From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
44.0222From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003851.9635From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
52.3782From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
52.7929From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:000004111.9122From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
12.0546From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
12.3036From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
18.8389From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
23.294From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
24.1111From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
24.5355From_analysisRNASeq.brenneri.WBls:0000041.control_mean
24.5495From_analysisRNASeq.brenneri.WBls:0000041.control_median
24.9879From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
25.2426From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
32.0835From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
39.4025From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
40.3958From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
40.8418From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
43.2201From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
43.8802From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
WBls:000010119.4026From_analysisRNASeq.brenneri.total_over_all_stages.control_median
21.3809From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00207411
OrthologWBGene00006787Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00032251Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00062211Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00099475Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00136945Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g12389Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g4151Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8092Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20002Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g27330Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g27331Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g4962Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g4963Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g4964Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8473Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g10522Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g21168Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12078Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_19196.g26177Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-52Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20229Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20230Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20231Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_03948.g31682Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22569Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12787Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4559Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20161610Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00228755Brugia malayiFrom_analysisWormBase-Compara
chrII_pilon.g6587Caenorhabditis elegansFrom_analysisWormBase-Compara
chrII_pilon.g6588Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246876Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00267333Strongyloides rattiFrom_analysisWormBase-Compara
ParalogWBGene00143869Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00145529Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00148673Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00149026Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00150133Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00150407Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00153498Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00155030Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00155815Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00190099Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00190323Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00190738Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00193525Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable calcium ion binding activity. Is an ortholog of C. elegans unc-52. In C. elegans, unc-52 is involved in several processes, including hemidesmosome assembly; muscle cell cellular homeostasis; and muscle structure development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN06354
Corresponding_CDS_historyCBN06354:np214
Corresponding_transcriptCBN06354.1
Other_sequenceCBC00237_1
CBC01765_1
CBC12429_1
Dviv_isotig32666
JI472463.1
AA294548.1
Dviv_isotig00420
ACC07357_1
BMC09974_1
Dviv_isotig00414
JI470105.1
BMC11316_1
DN190843.1
Oden_isotig28102
CR03618
FC547807.1
ACC16243_1
Tcir_isotig02028
MA03222
AI096109.1
Dviv_isotig30728
EX013376.1
Dviv_isotig00425
EW742700.1
EX555074.1
OVC03932_1
JO472119.1
JI164586.1
Dviv_isotig00421
CJC05184_1
HC05982
ACC31221_1
JO472841.1
JI236556.1
Tcir_isotig26755
Tcol_isotig15768
SS00655
HG04561
JI470916.1
JI477288.1
Tcir_isotig02029
FG974558.1
Acan_isotig17249
OVC00746_1
Dviv_isotig00427
AI132759.1
JI171626.1
FC817359.1
SS02042
MH01511
CR06729
Dviv_isotig00415
CRC11288_1
HCC00246_1
FG976173.1
Oden_isotig19886
Oden_isotig29369
SSC05847_1
HBC17672_1
TCC00662_1
JI465966.1
Oden_isotig19051
HBC15168_1
FG581088.1
Name_isotig03336
AAC00201_1
DI00788
ACC34876_1
BMC06478_1
MHC10592_1
GE638451.1
Dviv_isotig00418
GO239776.1
HBC20053_1
Dviv_isotig15426
DN191103.1
DIC00298_1
CJC14811_1
CJC04271_1
Dviv_isotig30403
ACC14269_1
JI166241.1
AAC00402_1
JI163789.1
Tcol_isotig08454
Dviv_isotig00417
EX537642.1
SSC02662_1
Dviv_isotig00413
FK801522.1
BMC00041_1
SRC01497_1
Dviv_isotig00419
SR03042
TX01158
HGC11484_1
Oden_isotig18007
EW741504.1
AW980135.1
MAC02587_1
CRC00301_1
FC547288.1
CRC04014_1
Tcol_isotig08453
EX542149.1
Name_isotig09025
Y16017.1
Tcir_isotig07331
Hbac_isotig01765
Experimental_infoMicroarray_resultsGPL14142_CBN15093_2884-2943_0.891_9_A
Remark[140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
MethodGene