WormBase Tree Display for Variation: WBVar00603334
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WBVar00603334 | Name | Public_name | WBVar00603334 | |||
---|---|---|---|---|---|---|
Other_name (11) | ||||||
HGVSg | CHROMOSOME_V:g.20897508A>G | |||||
Sequence_details | SMap | S_parent | Sequence | F25C8 | ||
Flanking_sequences | GATCAAGAAGCAGCATGGCAAACAGAAATTCTTGAAAAACTTGATGCAAAATCTCATAACATCGTTCCTCCATCA | TTCTTTTGGTCAAATGCTACCAGGAACTTCAACAGCTGAAAGAAGAATTGACAATGAAACCTATTGAGATGACAA | ||||
Mapping_target | F25C8 | |||||
Type_of_mutation | Substitution | a | g | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00027649 | From_analysis | WGS_Stein | |||
Analysis | WGS_Stein | |||||
DB_info | Database | dbSNP_ss | ss | ss477720455 | ||
Status | Live | |||||
Affects | Gene | WBGene00006812 | ||||
Transcript | F25C8.3d.1 (12) | |||||
F25C8.3b.1 (12) | ||||||
F25C8.3e.1 | VEP_consequence | missense_variant | ||||
VEP_impact | MODERATE | |||||
SIFT | 0.97 | tolerated | ||||
PolyPhen | 0.053 | benign | ||||
HGVSc | F25C8.3e.1:c.8842A>G | |||||
HGVSp | CE47428:p.Ile2948Val | |||||
cDNA_position | 8842 | |||||
CDS_position | 8842 | |||||
Protein_position | 2948 | |||||
Exon_number | 31/34 | |||||
Codon_change | Att/Gtt | |||||
Amino_acid_change | I/V | |||||
F25C8.3c.1 (12) | ||||||
F25C8.3a.1 (12) | ||||||
Remark | validatation rate is over 97% | |||||
Method | WGS_Stein |