WormBase Tree Display for Variation: WBVar00049313
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| WBVar00049313 | Name | Public_name | WBVar00049313 | ||
|---|---|---|---|---|---|
| Other_name | haw40985 | ||||
| haw141857 | |||||
| cewivar00124579 | |||||
| Y54F10AM.16a.1:c.1223-1928C>T | |||||
| Y54F10AM.4.1:c.2970C>T | |||||
| CE27288:p.Phe990= | |||||
| Y54F10AM.16b.1:c.1223-1928C>T | |||||
| HGVSg | CHROMOSOME_III:g.2541825C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y54F10AM | |
| Flanking_sequences | ccggagaggagattctcgacacatt | gaaattgtatatcaagtgaaaggaa | |||
| Mapping_target | Y54F10AM | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (75) | |||||
| Laboratory | RW | ||||
| QX | |||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| WBPerson1730 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01444426 | |||
| WBVar01259804 | |||||
| WBVar01328135 | |||||
| WBVar00561722 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00306126 | |||
| WBGene00000464 | |||||
| Transcript | Y54F10AM.16b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y54F10AM.16b.1:c.1223-1928C>T | ||||
| Intron_number | 7/12 | ||||
| Y54F10AM.4.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y54F10AM.4.1:c.2970C>T | ||||
| HGVSp | CE27288:p.Phe990= | ||||
| cDNA_position | 2970 | ||||
| CDS_position | 2970 | ||||
| Protein_position | 990 | ||||
| Exon_number | 11/12 | ||||
| Codon_change | ttC/ttT | ||||
| Amino_acid_change | F | ||||
| Y54F10AM.16a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y54F10AM.16a.1:c.1223-1928C>T | ||||
| Intron_number | 7/12 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00040707 | |||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw40985 | ||||
| Method | WGS_Hawaiian_Waterston |
