WormBase Tree Display for Variation: WBVar00091560

WBVar00091560 Name: Public_name: ok259
    Other_name: C40C9.5g.1:c.1026+103_2241+17delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
      C40C9.5c.1:c.1026+103_2241+17delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
      C40C9.5a.1:c.1017+103_2232+17delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
      C40C9.5f.1:c.1026+103_2241+17delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
      C40C9.5b.1:c.1017+103_2232+17delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
      C40C9.5e.1:c.1026+103_2241+17delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
      C40C9.5d.1:c.1017+103_2127+284delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
    HGVSg: CHROMOSOME_X:g.13626899_13629239delinsTTCCGCACACTACCGTCAATCTTCAACATGACAAGTCTTTTATAATTTTATATGTATGATATTTATGGTTTTTTCATACCCCCTACCCTACTTTCGATGTTTTCTCAAACTTTACCTAACAACTAGATCAGTAGCTATTGCACGCTTCAAACGTCTACTTACCTCTATTTTTATCTTTGTTTTTCCTTCCCAAATACCAGATTTTCATGTGTAATTCATCGTCACTTTTTTCTGTGTGTGTGTGCCACATTTTAATTTAATTCGACTTTTTTTTAATTCGGAACTATGTCACTTAAAATTATTTTTCCCCTCCGCTCCCAGCCAATCAAACCCA
  Sequence_details: SMap: S_parent: Sequence: Y12A6A
    Flanking_sequences: aaaaaaactagaaacaaattcacaaaagag gtccctctaacctctctctgcgtttctgcc
    Mapping_target: Y12A6A
    Type_of_mutation: Insertion: TTCCGCACACTACCGTCAATCTTCAACATGACAAGTCTTTTATAATTTTATATGTATGATATTTATGGTTTTTTCATACCCCCTACCCTACTTTCGATGTTTTCTCAAACTTTACCTAACAACTAGATCAGTAGCTATTGCACGCTTCAAACGTCTACTTACCTCTATTTTTATCTTTGTTTTTCCTTCCCAAATACCAGATTTTCATGTGTAATTCATCGTCACTTTTTTCTGTGTGTGTGTGCCACATTTTAATTTAATTCGACTTTTTTTTAATTCGGAACTATGTCACTTAAAATTATTTTTCCCCTCCGCTCCCAGCCAATCAAACCCA
      Deletion
    PCR_product: ok259_external
      ok259_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain (14)
    Laboratory: RB
      KP
      VC
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00006412
    Transcript: C40C9.5h.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-6/7
        Exon_number: 1-6/8
      C40C9.5e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C40C9.5e.1:c.1026+103_2241+17delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
        Intron_number: 7-13/15
        Exon_number: 8-13/16
      C40C9.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C40C9.5b.1:c.1017+103_2232+17delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
        Intron_number: 8-14/16
        Exon_number: 9-14/17
      C40C9.5c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C40C9.5c.1:c.1026+103_2241+17delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
        Intron_number: 7-13/14
        Exon_number: 8-13/15
      C40C9.5d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C40C9.5d.1:c.1017+103_2127+284delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
        Intron_number: 8-13/15
        Exon_number: 9-13/16
      C40C9.5g.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C40C9.5g.1:c.1026+103_2241+17delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
        Intron_number: 7-13/14
        Exon_number: 8-13/15
      C40C9.5f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C40C9.5f.1:c.1026+103_2241+17delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
        Intron_number: 7-13/14
        Exon_number: 8-13/15
      C40C9.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C40C9.5a.1:c.1017+103_2232+17delinsTGGGTTTGATTGGCTGGGAGCGGAGGGGAAAAATAATTTTAAGTGACATAGTTCCGAATTAAAAAAAAGTCGAATTAAATTAAAATGTGGCACACACACACAGAAAAAAGTGACGATGAATTACACATGAAAATCTGGTATTTGGGAAGGAAAAACAAAGATAAAAATAGAGGTAAGTAGACGTTTGAAGCGTGCAATAGCTACTGATCTAGTTGTTAGGTAAAGTTTGAGAAAACATCGAAAGTAGGGTAGGGGGTATGAAAAAACCATAAATATCATACATATAAAATTATAAAAGACTTGTCATGTTGAAGATTGACGGTAGTGTGCGGAA
        Intron_number: 8-14/16
        Exon_number: 9-14/17
      C40C9.5i.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-6/7
        Exon_number: 1-6/8
    Interactor: WBInteraction000051462
      WBInteraction000525317
  Isolation: Mutagen: UV/TMP
  Description: Phenotype (11)
    Phenotype_not_observed (11)
  Disease_info: Models_disease: DOID:0060041
    Models_disease_in_annotation: WBDOannot00000056
      WBDOannot00000475
      WBDOannot00000477
  Reference: WBPaper00041217
    WBPaper00035615
    WBPaper00035582
    WBPaper00066029
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele