WormBase Tree Display for Variation: WBVar00250280

WBVar00250280 Name: Public_name: tm1274
    Other_name: F54A5.1.1:c.461-35_903del
    HGVSg: CHROMOSOME_I:g.990486_990963del
  Sequence_details: SMap: S_parent: Sequence: F54A5
    Flanking_sequences: gaggcgtctgaattcctaggcgaagttgct gcttcgtcttctgcgtcatcgactgctaat
    Mapping_target: F54A5
    Source_location: 7 CHROMOSOME_I 990485 990964 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1274_external
      tm1274_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1274
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00018786
    Transcript: F54A5.1.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F54A5.1.1:c.461-35_903del
        cDNA_position: ?-915
        CDS_position: ?-903
        Protein_position: ?-301
        Intron_number: 2/4
        Exon_number: 3/5
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000306 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. M. Barr to the National Bioresource Project of Japan: wild-type pkd-2::gfp expression. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark (2)
  Method: NBP_knockout_allele