WormBase Tree Display for CDS: PPA14634
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| PPA14634 | SMap | S_parent | Sequence | PPA_ChrV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (46) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S632-0.4 | ||
| DB_remark | PPA-SQV-4 protein; contains similarity to Pfam domains PF00984 (UDP-glucose/GDP-mannose dehydrogenase family, central domain), PF01391 (Collagen triple helix repeat (20 copies)), PF02191 (Olfactomedin-like domain), PF03720 (UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain), PF03721 (UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain); contains similarity to Interpro domains IPR001732 (UDP-glucose/GDP-mannose dehydrogenase, N-terminal), IPR014027 (UDP-glucose/GDP-mannose dehydrogenase, C-terminal), IPR036220 (UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily), IPR036291 (NAD(P)-binding domain superfamily), IPR008160 (Collagen triple helix repeat), IPR008927 (6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily), IPR003112 (Olfactomedin-like domain), IPR014026 (UDP-glucose/GDP-mannose dehydrogenase, dimerisation), IPR028356 (UDP-glucose 6-dehydrogenase, eukaryotic type), IPR017476 (UDP-glucose/GDP-mannose dehydrogenase) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00104188 | ||||
| Corresponding_transcript | PPA14634.1 | |||||
| Corresponding_protein | PP64002 | |||||
| Corresponding_oligo_set (21) | ||||||
| Matching_cDNA | FG102391 | Inferred_automatically | transcript_builder.pl | |||
| FG097118 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results (21) | ||||||
| RNASeq_FPKM | WBls:0000032 | 17.1051 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 17.7757 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S632-0.4 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
