WormBase Tree Display for Gene: WBGene00000425
expand all nodes | collapse all nodes | view schema
WBGene00000425 | SMap | S_parent | Sequence | ZK512 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | ced-11 | Person_evidence | WBPerson261 | |||||
Sequence_name | ZK512.3 | ||||||||
Molecular_name | ZK512.3 | ||||||||
ZK512.3.1 | |||||||||
CE00409 | |||||||||
Other_name | CELE_ZK512.3 | Accession_evidence | NDB | BX284603 | |||||
Public_name | ced-11 | ||||||||
DB_info | Database | AceView | gene | 3K213 | |||||
WormQTL | gene | WBGene00000425 | |||||||
WormFlux | gene | WBGene00000425 | |||||||
NDB | locus_tag | CELE_ZK512.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000425|UniProtKB=P34641 | |||||||
family | PTHR13800 | ||||||||
NCBI | gene | 176288 | |||||||
RefSeq | protein | NM_066620.6 | |||||||
SwissProt | UniProtAcc | P34641 | |||||||
TREEFAM | TREEFAM_ID | TF321453 | |||||||
UniProt_GCRP | UniProtAcc | P34641 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ced | ||||||||
Allele (68) | |||||||||
Legacy_information | [Stanfield G] abnormal programmed cell death corpses | ||||||||
[C.elegansII] n2744 : abnormal programmed cell death corpses OA3: n2745, n2832, n2833, n2834Cloned: encodes predicted novel protein. [MT] | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00043643 | ||||||||
00043644 | |||||||||
00043645 | |||||||||
00043646 | |||||||||
00043647 | |||||||||
00043648 | |||||||||
Ortholog (34) | |||||||||
Paralog | WBGene00001651 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00001795 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00001796 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004149 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00008731 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00020972 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021404 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021408 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | The ced-11 gene encodes a predicted transmembrane ion channel related to the long transient receptor potential channel (LTRPC) subfamily of TRP channels found in Drosophila and mammals; CED-11 functions as a downstream effector in the programmed cell death pathway and may play a role in affecting the morphological changes seen in the nucleus, cytoplasm, and plasma membrane of apoptotic cells. | Paper_evidence | WBPaper00004159 | |||||
WBPaper00022068 | |||||||||
WBPaper00022724 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable monoatomic cation channel activity. Involved in apoptotic process. Predicted to be located in membrane. Expressed in apoptotic cell; head; hypodermis; and tail. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK512.3 | |||||||
Corresponding_transcript | ZK512.3.1 | ||||||||
Other_sequence (14) | |||||||||
Associated_feature | WBsf659389 | ||||||||
WBsf659390 | |||||||||
WBsf993579 | |||||||||
WBsf1015548 | |||||||||
WBsf225522 | |||||||||
WBsf225523 | |||||||||
WBsf225524 | |||||||||
Experimental_info | RNAi_result | WBRNAi00002366 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038317 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059472 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00006142 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2040 | ||||||||
Expr13488 | |||||||||
Expr1011305 | |||||||||
Expr1030241 | |||||||||
Expr1162895 | |||||||||
Expr2009842 | |||||||||
Expr2028082 | |||||||||
Drives_construct | WBCnstr00037551 | ||||||||
Construct_product | WBCnstr00037551 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (189) | |||||||||
Interaction (11) | |||||||||
Map_info | Map | III | Position | 0.165457 | Error | 0.00081 | |||
Well_ordered | |||||||||
Positive | Positive_clone | C33D7 | |||||||
ZK512 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Negative | Negative_clone | C37G7 | |||||||
ZK507 | |||||||||
Mapping_data | Multi_point | 2760 | |||||||
2761 | |||||||||
2762 | |||||||||
2763 | |||||||||
2764 | |||||||||
2765 | |||||||||
2766 | |||||||||
Reference (16) | |||||||||
Method | Gene |