WormBase Tree Display for Gene: WBGene00001662
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| WBGene00001662 | Evidence | Accession_evidence | EMBL | AY052771 | |||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_III | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | gop-3 | Person_evidence | WBPerson247 | |||||
| Sequence_name | C34E10.1 | ||||||||
| Molecular_name | C34E10.1 | ||||||||
| C34E10.1.1 | |||||||||
| CE26880 | |||||||||
| Other_name | C34E10.k | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_C34E10.1 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | gop-3 | ||||||||
| DB_info | Database | AceView | gene | 3G351 | |||||
| WormQTL | gene | WBGene00001662 | |||||||
| WormFlux | gene | WBGene00001662 | |||||||
| NDB | locus_tag | CELE_C34E10.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001662|UniProtKB=P46576 | |||||||
| family | PTHR12815 | ||||||||
| NCBI | gene | 175723 | |||||||
| RefSeq | protein | NM_065718.8 | |||||||
| SwissProt | UniProtAcc | P46576 | |||||||
| TREEFAM | TREEFAM_ID | TF106126 | |||||||
| UniProt_GCRP | UniProtAcc | P46576 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gop | ||||||||
| Allele (40) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00046490 | ||||||||
| 00046491 | |||||||||
| 00046492 | |||||||||
| 00046493 | |||||||||
| 00046494 | |||||||||
| 00046495 | |||||||||
| 00109211 | |||||||||
| Contained_in_operon | CEOP3272 | ||||||||
| Ortholog (39) | |||||||||
| Structured_description | Concise_description | gop-3 encodes an ortholog of the mammalian CGI-51 (comparative gene identification-51) proteins that display a high degree of similarity to the Haemophilus influenza D15 protective surface antigen; loss of gop-3 activity via large-scale RNAi screens indicates that GOP-3 is required for embryonic and larval development, as well as for normal postembryonic growth rates. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00004424 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in mitochondrial respiratory chain complex assembly and protein insertion into mitochondrial outer membrane. Predicted to be located in mitochondrial outer membrane. Human ortholog(s) of this gene implicated in non-alcoholic fatty liver disease. Is an ortholog of human SAMM50 (SAMM50 sorting and assembly machinery component). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080208 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24276) | ||||
| Molecular_info | Corresponding_CDS | C34E10.1 | |||||||
| Corresponding_transcript | C34E10.1.1 | ||||||||
| Other_sequence (36) | |||||||||
| Associated_feature | WBsf658923 | ||||||||
| WBsf224895 | |||||||||
| WBsf224896 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr1019001 | ||||||||
| Expr1030995 | |||||||||
| Expr1145896 | |||||||||
| Expr2012175 | |||||||||
| Expr2030411 | |||||||||
| Drives_construct | WBCnstr00036793 | ||||||||
| Construct_product | WBCnstr00036793 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (98) | |||||||||
| Interaction (45) | |||||||||
| Map_info | Map | III | Position | -1.85413 | Error | 0.000487 | |||
| Positive | Positive_clone | C34E10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00041771 | |||||||||
| WBPaper00047580 | |||||||||
| WBPaper00054664 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062642 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
