WormBase Tree Display for Gene: WBGene00004746
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WBGene00004746 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | sdc-2 | Person_evidence | WBPerson421 | |||||
Sequence_name | C35C5.1 | ||||||||
Molecular_name | C35C5.1 | ||||||||
C35C5.1.1 | |||||||||
CE18542 | |||||||||
Other_name | CELE_C35C5.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | sdc-2 | ||||||||
DB_info | Database | AceView | gene | XM151 | |||||
WormQTL | gene | WBGene00004746 | |||||||
WormFlux | gene | WBGene00004746 | |||||||
NDB | locus_tag | CELE_C35C5.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004746|UniProtKB=G5EBL3 | |||||||
family | PTHR13270 | ||||||||
NCBI | gene | 181341 | |||||||
RefSeq | protein | NM_077523.7 | |||||||
SwissProt | UniProtAcc | G5EBL3 | |||||||
TREEFAM | TREEFAM_ID | TF350609 | |||||||
UniProt_GCRP | UniProtAcc | G5EBL3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sdc | ||||||||
Allele (134) | |||||||||
Legacy_information | See also y15 | ||||||||
[C.elegansII] y15 : XX animals inviable and masculinized, XO animals WT. No maternal rescue. ES3 (XX); ME3.OA>20: y46, y74, y55 (weaker, Egl or Tra phenotypes). ???Cloned: 9.2 kb transcript, encodes predicted 2962 protein (344 kD), highly charged. [Nusbaum and Meyer 1989; TY] | |||||||||
Strain | WBStrain00035098 | ||||||||
WBStrain00035100 | |||||||||
WBStrain00035166 | |||||||||
WBStrain00035105 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00009802 | ||||||||
00009803 | |||||||||
00009804 | |||||||||
00009805 | |||||||||
00009806 | |||||||||
00009807 | |||||||||
00009808 | |||||||||
Ortholog (33) | |||||||||
Paralog | WBGene00018316 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
Structured_description | Concise_description | The sdc-2 gene encodes a protein that represses transcription of X chromosomes to achieve dosage compensation, and that also represses the male sex-determination gene her-1 to elicit hermaphrodite differentiation. | Paper_evidence | WBPaper00005215 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Involved in dosage compensation by hypoactivation of X chromosome and negative regulation of transcription by RNA polymerase II. Located in nuclear chromosome. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C35C5.1 | |||||||
Corresponding_transcript | C35C5.1.1 | ||||||||
Other_sequence | AF111934 | ||||||||
Associated_feature (9) | |||||||||
Gene_product_binds | WBsf019092 | ||||||||
WBsf019093 | |||||||||
Transcription_factor | WBTranscriptionFactor000093 | ||||||||
WBTranscriptionFactor000689 | |||||||||
Experimental_info | RNAi_result (35) | ||||||||
Expr_pattern | Expr10429 | ||||||||
Expr11875 | |||||||||
Expr1028636 | |||||||||
Expr1032344 | |||||||||
Expr1145975 | |||||||||
Expr2015659 | |||||||||
Expr2033892 | |||||||||
Drives_construct | WBCnstr00006791 | ||||||||
WBCnstr00015322 | |||||||||
WBCnstr00035415 | |||||||||
Construct_product | WBCnstr00005103 | ||||||||
WBCnstr00005104 | |||||||||
WBCnstr00006790 | |||||||||
WBCnstr00006791 | |||||||||
WBCnstr00035415 | |||||||||
Antibody | WBAntibody00000228 | ||||||||
WBAntibody00000496 | |||||||||
WBAntibody00000497 | |||||||||
WBAntibody00001184 | |||||||||
WBAntibody00002039 | |||||||||
WBAntibody00002042 | |||||||||
WBAntibody00002043 | |||||||||
Microarray_results (21) | |||||||||
Expression_cluster (134) | |||||||||
Interaction (77) | |||||||||
WBProcess | WBbiopr:00000056 | ||||||||
Map_info | Map | X | Position | 4.34757 | Error | 0.06798 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | yDp7 | |||||||
Positive_clone | C03B2 | ||||||||
C35C5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 1438 | |||||||
1439 | |||||||||
1440 | |||||||||
1774 | |||||||||
2062 | |||||||||
2293 | |||||||||
3319 | |||||||||
3642 | |||||||||
3643 | |||||||||
3687 | |||||||||
Pos_neg_data (11) | |||||||||
Landmark_gene | |||||||||
Reference (135) | |||||||||
Method | Gene |