WormBase Tree Display for Gene: WBGene00016668
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| WBGene00016668 | SMap | S_parent | Sequence | C45G7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ilys-1 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | C45G7.1 | ||||||||
| Molecular_name | C45G7.1 | ||||||||
| C45G7.1.1 | |||||||||
| CE46151 | |||||||||
| Other_name | CELE_C45G7.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ilys-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 May 2007 16:58:23 | WBPerson2970 | Name_change | CGC_name | ilys-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ilys | ||||||||
| Allele (33) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00038127 | ||||||||
| 00038128 | |||||||||
| 00038129 | |||||||||
| 00038130 | |||||||||
| 00038131 | |||||||||
| 00038132 | |||||||||
| 00038133 | |||||||||
| 00038134 | |||||||||
| 00122235 | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00017691 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00016670 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016669 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016958 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020982 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ilys-1 encodes one of five C. elegans invertebrate-type lysozymes; ilys-1 is found in a cluster with ilys-2 and ilys-3 on chromosome IV; however, unlike the four other invertebrate-type lysozymes, ILYS-1 lacks a predicted signal sequence; at the nucleotide level, ilys-1 contains an insertion and a number of nucleotide changes relative to the other ilys genes. | Paper_evidence | WBPaper00031802 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 18 Nov 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable lysozyme activity. Predicted to be involved in defense response to Gram-positive bacterium. Expressed in intestine; mc1; mc2; pm3; and pm4. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C45G7.1 | |||||||
| Corresponding_CDS_history | C45G7.1:wp227 | ||||||||
| Corresponding_transcript | C45G7.1.1 | ||||||||
| Other_sequence | MHC03367_1 | ||||||||
| Oden_isotig24614 | |||||||||
| MH02237 | |||||||||
| Associated_feature | WBsf1016906 | ||||||||
| WBsf1016907 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011982 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042536 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13074 | ||||||||
| Expr1026830 | |||||||||
| Expr1146523 | |||||||||
| Expr2012720 | |||||||||
| Expr2030956 | |||||||||
| Drives_construct | WBCnstr00027903 | ||||||||
| WBCnstr00038569 | |||||||||
| Construct_product | WBCnstr00027903 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (23) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Map | IV | Position | -7.33232 | Error | 0.019802 | |||
| Positive | Positive_clone | C45G7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031802 | ||||||||
| WBPaper00033984 | |||||||||
| WBPaper00043235 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
