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WormBase Tree Display for Gene: WBGene00023690

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Name Class

WBGene00023690SMapS_parentSequencecb25.fpc0003
IdentityVersion2
NameCGC_nameCbr-ttx-3From_analysisInferred_from_orthology
Sequence_nameCBG00265
Molecular_nameCBG00265
CBG00265.1
CBP25878
Other_nameCBG_00265Accession_evidenceNDBHE601409
Public_nameCbr-ttx-3
DB_infoDatabaseNDBlocus_tagCBG_00265
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:53WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-ttx-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classttx
Allele (18)
RNASeq_FPKMWBls:00000020.085337From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.182494From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.198358From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.327244From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.133915From_analysisRNASeq.briggsae.WBls:0000002.control_median
0.148769From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.362808From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.436679From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.51055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
0.470907From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.539362From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000043.95167From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
4.0782From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
4.20472From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
5.63598From_analysisRNASeq.briggsae.WBls:0000004.control_mean
6.39723From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
6.77167From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
6.85461From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.149617From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.314232From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0.793079From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.227899From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.306181From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
0.312219From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000350.292779From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.092295From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.155231From_analysisRNASeq.briggsae.WBls:0000038.control_mean
0.184591From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0.436333From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000410.019472From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.020664From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.038944From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.043711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.019475From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.060552From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.280652From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
6e-06From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.028772From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.143858From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
RNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.057693From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.202302From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.149617From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.559728From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.191695From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.989056From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00127056
Ortholog (29)
ParalogWBGene00027659Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028234Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029930Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030186Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030483Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033216Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034847Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036200Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036585Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037272Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Is an ortholog of C. elegans ttx-3. In C. elegans, ttx-3 is involved in several processes, including olfactory learning; regulation of developmental process; and response to temperature stimulus.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG00265
Corresponding_CDS_historyCBG00265:bp194
Corresponding_transcriptCBG00265.1
Other_sequenceJI479595.1
Acan_isotig13660
JI171393.1
Dviv_isotig25707
Experimental_infoExpr_patternExpr1057313
Microarray_resultsGPL8303_CB6_WBGene00023690_A
GPL14143_CBG00265_768-827_0.816_20_A
GPL14143_CBG00265_833-892_0.825_9_B
GPL14143_CBG00265_956-1015_0.513_159_C
MethodGene