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WormBase Tree Display for Gene: WBGene00029930

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Name Class

WBGene00029930SMapS_parentSequencecb25.fpc1402c
IdentityVersion2
NameCGC_nameCbr-lim-6From_analysisInferred_from_orthology
Sequence_nameCBG08064
Molecular_nameCBG08064
CBG08064.1
CBP44148
Other_nameCBG_08064Accession_evidenceNDBHE600971
Public_nameCbr-lim-6
DB_infoDatabaseNDBlocus_tagCBG_08064
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lim-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlim
RNASeq_FPKMWBls:00000021.44773From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.67255From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.69505From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.87486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.15398From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.5429From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.57139From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.097896From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.112784From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.127671From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
0.238131From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.488827From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000042.17488From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
2.9379From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
3.70092From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
2.53029From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
3.05909From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
3.06267From_analysisRNASeq.briggsae.WBls:0000004.control_mean
3.84817From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.63437From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.05863From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.54153From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.805124From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.975877From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
1.03794From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000351.37471From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.41969From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
1.14602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.1633From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.19002From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.18057From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
4.01379From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.214143From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.584038From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.617298From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.650558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.654712From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.17011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.188406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
0.354476From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
0.469257From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.526955From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630.428488From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.884528From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.17167From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.38846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.43402From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.986211From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.28006From_analysisRNASeq.briggsae.WBls:0000063.control_median
1.49463From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001011.17167From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.25857From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.17089From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.33138From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00133343
Ortholog (27)
ParalogWBGene00023690Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027659Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028234Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030186Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030483Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033216Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034847Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036200Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036585Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037272Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Is an ortholog of C. elegans lim-6. In C. elegans, lim-6 is involved in several processes, including regulation of gene expression; system process; and uterus morphogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08064
Corresponding_CDS_historyCBG08064:bp194
CBG08064:bp255
Corresponding_transcriptCBG08064.1
Other_sequenceES570229.1
Acan_isotig17193
ES563134.1
TSC14218_1
TSC06900_1
SSC02344_1
Dviv_isotig26261
TS05827
JI212657.1
Experimental_infoExpr_patternExpr1052441
Microarray_resultsGPL8303_CB6_WBGene00029930_A
GPL14143_CBG08064_262-321_0.848_11_C
GPL14143_CBG08064_349-408_0.876_2_B
GPL14143_CBG08064_483-542_0.829_22_A
MethodGene