WormBase Tree Display for Gene: WBGene00056029

WBGene00056029 SMap: S_parent: Sequence: Crem_Contig4
  Identity: Version: 3
    Name: CGC_name: Cre-cpn-4 From_analysis: Inferred_from_orthology
      Sequence_name: CRE28296
      Molecular_name: CRE28296
        CRE28296.1
        RP13363
      Other_name: cr01.sctg6.wum.108
      Public_name: Cre-cpn-4
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:43 WBPerson2970 Name_change: CGC_name: Cre-cpn-4
        3 03 Jul 2008 11:45:01 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE28296
                Other_name: cr01.sctg6.wum.108
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cpn
    RNASeq_FPKM: WBls:0000004 0.72491 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        1.70845 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        2.692 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 (53)
      WBls:0000027 30.4278 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        36.3821 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        37.8184 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        45.2089 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        5.66464 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        64.2269 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 109.174 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        13.6228 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        140.273 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        173.627 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 59.2847 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        60.0174 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        62.3017 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        63.6413 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        64.9809 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        66.2476 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        74.9702 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        75.9304 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
      WBls:0000063 (12)
      WBls:0000101 68.6802 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        69.644 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog: WBGene00000778 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000780 Caenorhabditis elegans From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00039390 Caenorhabditis briggsae From_analysis: OMA
            WormBase-Compara
      WBGene00159661 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00128399 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00131242 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00163191 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g10369 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g14321 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g2580 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13250 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22831 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g15414 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4485 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g14441 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g11874 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g15367 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g22270 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00306.g8909 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-cpn-4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g17886 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01704.g22633 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_14843 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_001689 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10591 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g16486 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10274500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g2172 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00262529 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00291913 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00064707 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00060094 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00062365 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00051281 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00052222 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00056204 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00056433 Caenorhabditis remanei From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Smooth muscle protein/calponin; CH domain superfamily; Calponin homology domain; and Calponin homology (CH) domain. Is an ortholog of C. elegans cpn-4. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE28296
    Corresponding_transcript: CRE28296.1
    Other_sequence (41)
  Experimental_info: Expr_pattern: Expr1096370
    Microarray_results: GPL14146_CRE28296_266-325_0.838_13_A
  Method: Gene