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WormBase Tree Display for Expression_cluster: WBPaper00025032:cluster_56

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Name Class

WBPaper00025032:cluster_56DescriptionC-lineage related expression profile.
SpeciesCaenorhabditis elegans
AlgorithmQT clustering
ReferenceWBPaper00025032
Microarray_results (25)
GeneWBGene00011510
WBGene00017827
WBGene00010990
WBGene00004892
WBGene00017996
WBGene00013718
WBGene00011814
WBGene00009664
WBGene00006499
WBGene00012695
WBGene00022798
WBGene00007603
WBGene00011039
WBGene00011040
WBGene00044987
WBGene00017931
WBGene00020433
WBGene00008685
WBGene00019757
WBGene00007690
WBGene00017053
WBGene00016965
WBGene00019333
WBGene00019127
WBGene00007270
WBGene00003864
Attribute_ofMicroarray_experiment (30)
RemarkThis clustering algorithm assembles a series of clusters ordered by size with a defined limit on the largest pair-wise distance allowed between any two profiles in a cluster. Distance between profiles is measured as 1-R, where R is the Pearson correlation coefficient. Although we limited this distance to 0.3, some genes are included in clusters simply by chance. To reduce the spurious inclusion of these genes in the final clusters, we systematically re-sampled our data (100 times) with two forms of synthetic noise added at each reiteration to generate an Ravg. Noise was added to log2 scale RMA expression data, and was generated by a two-component model consisting of an additive Gaussian background with standard deviation 0.2, and a multiplicative Gaussian sampling error with a standard deviation of 0.05. Simulated data were floored at 1 RMA unit.
Type: Co-expression Cluster