WormBase Tree Display for Variation: WBVar00049414
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| WBVar00049414 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00049414 | ||||
| Other_name | cbs35788 | |||||
| cb35788 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIII:g.11482891A>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4154 | ||
| Flanking_sequences | ttaagagggggacaggggaaccttg | tggctggagggtcaaaaacaaaatt | ||||
| Mapping_target | cb25.fpc4154 | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CCNNGG | BsaJI, BseDI, BssECI, SecI | 735 197 58 10 | ||
| CGRYCG | BsaOI, Bsh1285I, BsiEI, BstMCI, McrI | 892 108 | ||||
| CCWWGG | BssT1I, Eco130I, EcoT14I, ErhI, StyI | 745 197 58 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 476 276 137 111 | ||||
| CAC | HindI | 194 180 130 104 97 44 44 42 37 35 32 30 12 7 2 2 2 2 2 2 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 176 165 160 95 81 72 56 52 51 37 19 18 16 2 | ||||
| Polymorphic_strain_digest | CCNNGG | BsaJI, BseDI, BssECI, SecI | 500 235 197 58 10 | |||
| CGRYCG | BsaOI, Bsh1285I, BsiEI, BstMCI, McrI | 1000 | ||||
| CCWWGG | BssT1I, Eco130I, EcoT14I, ErhI, StyI | 500 245 197 58 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 458 276 137 111 18 | ||||
| CAC | HindI | 180 142 130 104 97 52 44 44 42 37 35 32 30 12 7 2 2 2 2 2 2 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 227 165 160 81 72 58 56 52 37 37 19 18 16 2 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00039233 | ||||
| Transcript | CBG20190a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG20190a.1:c.280-2275T>C | |||||
| Intron_number | 2/12 | |||||
| CBG20190b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG20190b.1:c.280-2275T>C | |||||
| Intron_number | 2/15 | |||||
| CBG20190c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG20190c.1:c.280-2275T>C | |||||
| Intron_number | 2/14 | |||||
| CBG20190d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG20190d.1:c.484-2275T>C | |||||
| Intron_number | 2/12 | |||||
| CBG20190e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG20190e.1:c.484-2275T>C | |||||
| Intron_number | 2/15 | |||||
| CBG20190f.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG20190f.1:c.484-2275T>C | |||||
| Intron_number | 2/14 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: Polybayes, ssaha-SNP v2.0 | |||||
| This SNP was observed in 2 sequencing read(s) | ||||||
| Method | SNP |
