WormBase Tree Display for Variation: WBVar00049429
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| WBVar00049429 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00049429 | ||||
| Other_name | cbs35791 | |||||
| cb35791 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIII:g.11482498G>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4154 | ||
| Flanking_sequences | aagacgagataaattaactcaagtc | gtcgatgcgcgaaaaatgcgaaaaa | ||||
| Mapping_target | cb25.fpc4154 | |||||
| Type_of_mutation | Substitution | G | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CCNNGG | BsaJI, BseDI, BssECI, SecI | 343 342 247 58 10 | ||
| CGRYCG | BsaOI, Bsh1285I, BsiEI, BstMCI, McrI | 501 499 | ||||
| CCWWGG | BssT1I, Eco130I, EcoT14I, ErhI, StyI | 590 352 58 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 419 276 220 85 | ||||
| CAC | HindI | 222 194 180 130 119 42 35 24 18 12 10 7 3 2 2 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 185 176 95 81 72 52 51 50 46 39 38 37 25 21 18 9 5 | ||||
| Polymorphic_strain_digest | CCNNGG | BsaJI, BseDI, BssECI, SecI | 343 247 235 107 58 10 | |||
| CGRYCG | BsaOI, Bsh1285I, BsiEI, BstMCI, McrI | 1000 | ||||
| CCWWGG | BssT1I, Eco130I, EcoT14I, ErhI, StyI | 590 245 107 58 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 419 276 202 85 18 | ||||
| CAC | HindI | 222 180 142 130 119 52 42 35 24 18 12 10 7 3 2 2 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 227 185 81 72 58 52 50 46 39 38 37 37 25 21 18 9 5 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00039233 | ||||
| Transcript | CBG20190a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG20190a.1:c.280-1882C>A | |||||
| Intron_number | 2/12 | |||||
| CBG20190b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG20190b.1:c.280-1882C>A | |||||
| Intron_number | 2/15 | |||||
| CBG20190c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG20190c.1:c.280-1882C>A | |||||
| Intron_number | 2/14 | |||||
| CBG20190d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG20190d.1:c.484-1882C>A | |||||
| Intron_number | 2/12 | |||||
| CBG20190e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG20190e.1:c.484-1882C>A | |||||
| Intron_number | 2/15 | |||||
| CBG20190f.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG20190f.1:c.484-1882C>A | |||||
| Intron_number | 2/14 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 2 sequencing read(s) | ||||||
| Method | SNP |
