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WormBase Tree Display for Variation: WBVar00087793

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Name Class

WBVar00087793NamePublic_namehc104
Other_nameCE37870:p.Arg115Ter
AC3.10.1:c.343C>T
AC3.10.2:c.343C>T
HGVSgCHROMOSOME_V:g.10384739C>T
Sequence_detailsSMapS_parentSequenceAC3
Flanking_sequencesttgaaagcagtcacaccgatggagaaaaatgatacgtggtagagaaatcgacacctgaac
Mapping_targetAC3
Type_of_mutationSubstitutionctPaper_evidenceWBPaper00026789
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00000373
WBStrain00000374
WBStrain00000383
WBStrain00000386
LaboratoryBA
StatusLive
AffectsGeneWBGene00004964
TranscriptAC3.10.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScAC3.10.1:c.343C>T
HGVSpCE37870:p.Arg115Ter
cDNA_position391
CDS_position343
Protein_position115
Exon_number4/7
Codon_changeCga/Tga
Amino_acid_changeR/*
AC3.10.2VEP_consequencestop_gained
VEP_impactHIGH
HGVScAC3.10.2:c.343C>T
HGVSpCE37870:p.Arg115Ter
cDNA_position369
CDS_position343
Protein_position115
Exon_number3/6
Codon_changeCga/Tga
Amino_acid_changeR/*
GeneticsInterpolated_map_positionV2.54027
Mapping_dataIn_multi_point1191
2133
2134
In_pos_neg_data4769
4770
4771
4772
4773
4774
DescriptionPhenotypeWBPhenotype:0000670Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarkHermaphrodites and males produce nonfunctional but motile sperm with short pseudopods. Difficult to score (ES2) in adult.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Ease_of_scoringES2_Difficult_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001344Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarksevere defects in fibrous body-membranous organelle.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001727Paper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
RemarkWild-type N2 animals had an average length of 1222 μm and width of 78 μm (Additional file 6). Mutants for spe-10(hc104) showed an increased width to 85-90 μm.Paper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
Phenotype_not_observedWBPhenotype:0000039Paper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
RemarkTable 2, Additional file 13APaper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
WBPhenotype:0000315Paper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
RemarkAdditional file 12Paper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
WBPhenotype:0000643Paper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
RemarkAnimals did not show a significant difference in age-related decline of thrashing rate, compared to wild type (N2) controls (Additional file 9)Paper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
WBPhenotype:0001700Paper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
RemarkFigure 3 A-BPaper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
WBPhenotype:0001726Paper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
RemarkWild-type N2 animals had an average length of 1222 μm and width of 78 μm (Additional file 6). Mutants for spe-10(hc104) showed no significant changes in body length.Paper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
WBPhenotype:0004023Paper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
RemarkAdditional file 8Paper_evidenceWBPaper00045834
Curator_confirmedWBPerson2987
ReferenceWBPaper00045834
MethodSubstitution_allele