WormBase Tree Display for Variation: WBVar00092149

WBVar00092149 Evidence: Paper_evidence: WBPaper00032446
  Name: Public_name: ok874
    Other_name: C25F6.4.1:c.530_1833-108del
    HGVSg: CHROMOSOME_X:g.5462404_5465378del
  Sequence_details: SMap: S_parent: Sequence: C25F6
    Flanking_sequences: GTTTGTCCCCTCGTCTAAAAACACAAGAACTGTGTGCATGCGAGCCGAAA CCGTGAAGTGAAAAATCAACAAATTTTATACTCGTATGTATCCTCATGCT
    Mapping_target: C25F6
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031680
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live: Curator_confirmed: WBPerson4025
  Affects: Gene: WBGene00016104
    Transcript: C25F6.4.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C25F6.4.1:c.530_1833-108del
        cDNA_position: 556-?
        CDS_position: 530-?
        Protein_position: 177-?
        Intron_number: 5-13/16
        Exon_number: 5-13/17
    Interactor: WBInteraction000573249
      WBInteraction000573250
  Isolation: Mutagen: UV/TMP
  Description: Phenotype_not_observed: WBPhenotype:0001224 Paper_evidence: WBPaper00053867
        Curator_confirmed: WBPerson557
      WBPhenotype:0001652 Paper_evidence: WBPaper00032446
        Curator_confirmed: WBPerson2021
  Reference: WBPaper00032446
    WBPaper00053867
  Remark: This was suppressed because it overlapped with a corrected genome sequence error feature Feature_evidence: WBsf047778
    This was un-suppressed after examination showed it is not changed by the corrected genome sequence error Curator_confirmed: WBPerson4025
    Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele