WormBase Tree Display for Variation: WBVar00113242

WBVar00113242 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00113242
    Other_name: cbs48763
      cb48763 Paper_evidence: WBPaper00055507
    HGVSg: chrI:g.6127888G>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc1417
    Flanking_sequences: gatctgtgaaaaggcaccgacaggg gaaagcctcctccctcatcctcttc
    Mapping_target: cb25.fpc1417
    Type_of_mutation: Substitution: G T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: TTTAAA AhaIII, DraI 663 175 162
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 503 414 83
        CAC HindI 351 119 79 70 43 39 38 34 30 28 28 27 23 20 15 12 10 8 8 5 3 3 3 2 2
        TTAA MseI, Tru1I, Tru9I 467 189 161 153 23 7
      Polymorphic_strain_digest: TTTAAA AhaIII, DraI 664 175 161
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 917 83
        CAC HindI 351 108 79 70 43 39 38 34 30 28 28 27 23 20 20 15 11 10 8 5 3 3 3 2 2
        TTAA MseI, Tru1I, Tru9I 468 189 160 153 23 7
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00030075
    Transcript: CBG08244a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08244a.1:c.139-209C>A
        Intron_number: 2/8
      CBG08244b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08244b.1:c.139-209C>A
        Intron_number: 1/7
      CBG08244c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08244c.1:c.139-209C>A
        Intron_number: 2/9
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP